PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 164aa MW: 17875.7 Da PI: 10.0435 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 111.9 | 8.7e-35 | 7 | 163 | 225 | 374 |
GRAS 225 devLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWr 316 +L v+++sP vvv+v+ e +++ sF + f+ le+ys++++sl+a + se+ +k+E+++l+++iv +v ++ a+ + ++ ++ r PK08191.1 7 GGFLGEVRRVSPAVVVFVDGEGWGGEPgtapttSFRRNFVGGLEFYSMVLESLDAAM-VGSEWVRKIEAFVLKPRIVMAVEAASAAaaAVGSGRRTASFR 105 569******************655444444566********************8885.799*******************9887763366788999**** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+++ aG++pv+ls +a qa++ll kv+++g++v +++++lvl+W++r+Lv++S+Wr PK08191.1 106 EMFHGAGMRPVQLSRFADFQAECLLGKVQVRGFHVAKRQAELVLCWHERALVATSVWR 163 *********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.516 | 1 | 143 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-32 | 7 | 163 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
VLRHHGGGFL GEVRRVSPAV VVFVDGEGWG GEPGTAPTTS FRRNFVGGLE FYSMVLESLD 60 AAMVGSEWVR KIEAFVLKPR IVMAVEAASA AAAAVGSGRR TASFREMFHG AGMRPVQLSR 120 FADFQAECLL GKVQVRGFHV AKRQAELVLC WHERALVATS VWRC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099836.1 | 4e-73 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-54 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A2P5D340 | 1e-74 | A0A2P5D340_PARAD; GRAS transcription factor | ||||
STRING | XP_010099836.1 | 2e-72 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5959 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 4e-45 | GRAS family protein |
Publications ? help Back to Top | |||
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