PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK07904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 799aa MW: 88480.6 Da PI: 7.229 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 9.8e-24 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el++ PK07904.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QRRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGENGELRL 260 99****************************853.3345679************************************************..4499999** PP EEE-S CS B3 95 kvfrk 99 +++r+ PK07904.1 261 GIRRS 265 **986 PP | |||||||
2 | Auxin_resp | 116.1 | 3.1e-38 | 290 | 371 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv++++k++k+++++v++G+Rfk +f++eds+err+sG+v+g+ dldp+rW nSkWr+L PK07904.1 290 VANAVSTKSMFHVFYSPRATHAEFVIPYQKFVKSVTNPVAIGTRFKTRFDMEDSPERRCSGVVTGICDLDPYRWANSKWRCL 371 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.16E-44 | 155 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-40 | 157 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-23 | 162 | 264 | No hit | No description |
Pfam | PF02362 | 7.8E-22 | 164 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 164 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-24 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.2E-32 | 290 | 371 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-5 | 669 | 758 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.281 | 676 | 758 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.0E-9 | 676 | 755 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 799 aa Download sequence Send to blast |
MEIDLNHVVA EVEKNTLCNG DCEKGSSSCV CCLSSSTSSC SSNSSSAPVT SSIYLELWHA 60 CAGPLTSLPK KGNVVVYFPQ GHLEQVAPFS SLDLPTFDLK PQIFCKVINV QLLANKENDE 120 VYTHVTLLPQ PELVGVKQEG KEVEELGGDE GIAGSPTKST PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF PPLDYKQRRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFVNQK 240 NLVSGDAVLF LRGENGELRL GIRRSVRPRN GLPDSIVRNQ NSYPNVLSLV ANAVSTKSMF 300 HVFYSPRATH AEFVIPYQKF VKSVTNPVAI GTRFKTRFDM EDSPERRCSG VVTGICDLDP 360 YRWANSKWRC LMVRWDEDIG NSHQERISPW EIDPSVSLPP LSIQSSPRLK KMRTSLQSNP 420 PSNPLIVGGG GFLDFEESVR SSKVLQGQEN IGFVSPFYGR DTVNHPLDFE MHSSAHQSLA 480 ALNTTKKSTM NEFMRTQPTT YTGFAESSRF PKVLQGQEIC QLRSLTGKSN FNLGAWGNSS 540 LGSCTSFNSY QAAKPNFYSM ASEPLQTTYF PFGDIRRAGS NPSIRSNVTT FPRENVNISP 600 YTIQTGIVRN EVGIPNTPNE LKPQESNSAL PLPTLETNLR NPKDDSFGGS VTSCKLFGFS 660 LTGETTTPNS QSSNKRSCTK VHKQGSLVGR AIDLSKLNGY GELLSELEWL FNMEGLLKDP 720 DKGWRILYTD SENDVMVVGD DPWHEFCNVV SKIHIHTREE VEKMSFGVTS DDQSCLEQAP 780 VSKSSSVGQP DSSPTVIRV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-119 | 39 | 394 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-119 | 39 | 394 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104118.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A2P5E4G1 | 0.0 | A0A2P5E4G1_TREOI; Auxin response factor | ||||
STRING | XP_010104118.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |