PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 799aa    MW: 88480.6 Da    PI: 7.229
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07904.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24164265199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      + + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el++
  PK07904.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QRRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGENGELRL 260
                99****************************853.3345679************************************************..4499999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  PK07904.1 261 GIRRS 265
                **986 PP

2Auxin_resp116.13.1e-38290371182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+stks+F+v+Y+Pra+++eFv++++k++k+++++v++G+Rfk +f++eds+err+sG+v+g+ dldp+rW nSkWr+L
   PK07904.1 290 VANAVSTKSMFHVFYSPRATHAEFVIPYQKFVKSVTNPVAIGTRFKTRFDMEDSPERRCSGVVTGICDLDPYRWANSKWRCL 371
                 689******************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-44155276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40157275IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-23162264No hitNo description
PfamPF023627.8E-22164265IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14164266IPR003340B3 DNA binding domain
SMARTSM010192.3E-24164266IPR003340B3 DNA binding domain
PfamPF065079.2E-32290371IPR010525Auxin response factor
PfamPF023091.2E-5669758IPR033389AUX/IAA domain
PROSITE profilePS5174522.281676758IPR000270PB1 domain
SuperFamilySSF542775.0E-9676755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MEIDLNHVVA EVEKNTLCNG DCEKGSSSCV CCLSSSTSSC SSNSSSAPVT SSIYLELWHA  60
CAGPLTSLPK KGNVVVYFPQ GHLEQVAPFS SLDLPTFDLK PQIFCKVINV QLLANKENDE  120
VYTHVTLLPQ PELVGVKQEG KEVEELGGDE GIAGSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQRRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFVNQK  240
NLVSGDAVLF LRGENGELRL GIRRSVRPRN GLPDSIVRNQ NSYPNVLSLV ANAVSTKSMF  300
HVFYSPRATH AEFVIPYQKF VKSVTNPVAI GTRFKTRFDM EDSPERRCSG VVTGICDLDP  360
YRWANSKWRC LMVRWDEDIG NSHQERISPW EIDPSVSLPP LSIQSSPRLK KMRTSLQSNP  420
PSNPLIVGGG GFLDFEESVR SSKVLQGQEN IGFVSPFYGR DTVNHPLDFE MHSSAHQSLA  480
ALNTTKKSTM NEFMRTQPTT YTGFAESSRF PKVLQGQEIC QLRSLTGKSN FNLGAWGNSS  540
LGSCTSFNSY QAAKPNFYSM ASEPLQTTYF PFGDIRRAGS NPSIRSNVTT FPRENVNISP  600
YTIQTGIVRN EVGIPNTPNE LKPQESNSAL PLPTLETNLR NPKDDSFGGS VTSCKLFGFS  660
LTGETTTPNS QSSNKRSCTK VHKQGSLVGR AIDLSKLNGY GELLSELEWL FNMEGLLKDP  720
DKGWRILYTD SENDVMVVGD DPWHEFCNVV SKIHIHTREE VEKMSFGVTS DDQSCLEQAP  780
VSKSSSVGQP DSSPTVIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-119393942354Auxin response factor 1
4ldy_B1e-119393942354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104118.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2P5E4G10.0A0A2P5E4G1_TREOI; Auxin response factor
STRINGXP_010104118.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]