PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07888.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 81aa    MW: 9688.95 Da    PI: 9.1907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07888.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-155791088
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
               +lk++ +++p  f+e++g+    +  + ++ + g +W +kl  ++  g+++l++GW eF k   Lk g +++F++dg+s
  PK07888.1  5 TLKENKIRVPQYFVEKCGET--LTERVFVKLPCGSKWPMKL--ENDNGKFWLQNGWPEFMKHYSLKRGHMLTFRYDGNS 79
               5678899**********955..6778***************..********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.31181IPR003340B3 DNA binding domain
SMARTSM010190.0023181IPR003340B3 DNA binding domain
PfamPF023623.3E-13579IPR003340B3 DNA binding domain
CDDcd100176.82E-12579No hitNo description
Gene3DG3DSA:2.40.330.101.0E-17680IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17680IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
XLTETLKENK IRVPQYFVEK CGETLTERVF VKLPCGSKWP MKLENDNGKF WLQNGWPEFM  60
KHYSLKRGHM LTFRYDGNSE I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030727.12e-24B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P5FY124e-32A0A2P5FY12_TREOI; B3 DNA binding domain containing protein (Fragment)
TrEMBLA0A2P5FY142e-31A0A2P5FY14_TREOI; B3 DNA binding domain containing protein
STRINGEMJ023376e-22(Prunus persica)
STRINGXP_010089002.11e-20(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-18B3 family protein