PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24833 Da PI: 6.2623 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.6e-18 | 5 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++l PK07876.1 5 RGKFSQEEEETILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 50 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.561 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-15 | 2 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 2 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 4 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 5 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-13 | 7 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
XDIKRGKFSQ EEEETILNLH SILGNKWSAI ASHLPGRTDN EIKNFWNTHL KKKLIQMGID 60 PMTHRPRTDI FSSLPHLIAL ANLKELMDHP WEEHAVRIQA EAVQNMAKLH YLQYLLQPPN 120 NNNNNNLNTS DIETINLLNS LSSSFKDNNN NNSTQTVFDS PHDLFQNPIT TTTTHHNDLI 180 LQSLHDSSLS FAHLPDLKIP CSNDHNNNSN QDDERSX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975709.1 | 6e-83 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9SBF3 | 3e-54 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A2P5EKS4 | 6e-97 | A0A2P5EKS4_TREOI; MYB transcription factor | ||||
STRING | EOX92094 | 5e-82 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 5e-49 | myb domain protein 93 |
Publications ? help Back to Top | |||
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