PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07866.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93147.9 Da    PI: 5.9626
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07866.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182280357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PK07866.1 22 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
               6789*****************************************************97 PP
2START170.11.4e-531713782204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++ a++l vi +g  g+++l +++++
  PK07866.1 171 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWYRDCRCADVLSVIPTGngGTIELVYMQTY 269
                68999*****************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+ +l++ + vi+++S++  +  p+   ss +vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++k+
  PK07866.1 270 APTTLAAaRDFWTLRYTTSLEDNSIVICERSLTTSTGGPTgppSSCFVRAEVLPSGYLIRPCEGGGSSIHIVDHVDLDAWSVPEVLRPLYESSKILAQKM 369
                **********************************9999998999******************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  PK07866.1 370 TIAALRHIR 378
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-18780IPR009057Homeodomain-like
PROSITE profilePS5007115.7751781IPR001356Homeobox domain
SMARTSM003898.1E-151985IPR001356Homeobox domain
PfamPF000465.0E-162280IPR001356Homeobox domain
SuperFamilySSF466892.61E-162284IPR009057Homeodomain-like
CDDcd000863.00E-162282No hitNo description
CDDcd146863.26E-674113No hitNo description
PROSITE profilePS5084826.49161389IPR002913START domain
CDDcd088753.12E-69165381No hitNo description
Gene3DG3DSA:3.30.530.201.6E-23169375IPR023393START-like domain
SMARTSM002341.7E-49170380IPR002913START domain
SuperFamilySSF559615.08E-38171382No hitNo description
PfamPF018523.9E-51171378IPR002913START domain
PfamPF086703.1E-50703848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALVMHKDSP TNNCYKQMDN SKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSALNKL LMEENDRLQK QVSHLVYENG  120
FMRNQLHTAS GTTTDNSCES VVMNGQNQQQ QNPTPQQPQR DANNPAGLLA IAEETLAEFL  180
SKATGTAVDW VQMIGMKPGP DSIGIVAVSR NCSGVAARAC GLVSLEPTKV AEILKDRTSW  240
YRDCRCADVL SVIPTGNGGT IELVYMQTYA PTTLAAARDF WTLRYTTSLE DNSIVICERS  300
LTTSTGGPTG PPSSCFVRAE VLPSGYLIRP CEGGGSSIHI VDHVDLDAWS VPEVLRPLYE  360
SSKILAQKMT IAALRHIRQI AQEASGEIQY GGGRQPAVLR TFSQRLCRGF NDAVNGFTDD  420
GWSLLGSDGV EDVTIVVNSS SNKFLGSQYN ASMFPTFGGV LCAKASMLLQ NVPPALLVQF  480
LREHRSEWAD YGVDAYSASC LKPSPYAIPC ARSGGFPSSQ VNLHLAHTVE NEEFLEVVRL  540
EGQAFSPEEV ALARDMYLLQ LCSGVDANAV GSCAQLVFAP IDESFADEAP LLPSGFRVIP  600
LDPKADTPGA TRTLDLASTL EVGSGSARPA SEADASYNLR SVLTIAFQFT FENHTRDNVA  660
AMARQYVRSV VGSVQRVAMA IAPSQLGSQI GPKALPQSPE ALTLTQWICR SYRIHTGGEL  720
FQMDSPPSGD AILKRLWNHS DAIMCCSVKT NASPIFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEGGRKN LCSEFSKIMQ QGFAYLPAGI CVSSMGRPVS YEQAVAWKVL NDEDSNHCLA  840
FMFMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098570.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2P5FT780.0A0A2P5FT78_TREOI; Octamer-binding transcription factor
STRINGXP_010098570.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]