PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07858.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 396aa    MW: 43925.5 Da    PI: 6.3013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07858.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14196242354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  PK07858.1 196 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 242
                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14197251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14197249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-5206245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMSYGMKEDH EAECSQTIQN NIQGFHIQDQ FLLHQHQQIM HHHHQPDHPI TSDHHLHHNH  60
HIYNNGGGRS AMLFPEVSPM LQPTTWSLPP VHAFNPAHFG SNPVRDHDPF LAPTQPSSSY  120
ASFMNRRAGG GGAPSLQFTY DGGSHHHPSS DHHLRILSDT IGSGVQPGSG PFGIQAELGK  180
MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK  240
ELKRQTSLIA ETSPVPTETD ELTVDDASSD EDGRFIIKAS LCCEDRSDLL PDLIKTLKAL  300
RLRTLKAEIT TLGGRVKNVL FITGDEHSGG ADHEDDENDN NNNDDDDNDD DQTTTHQYCI  360
SSIQEALKAV IEKKATEDSS SGSVKRQRTT NNINIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093397.11e-165transcription factor bHLH30
RefseqXP_024019422.11e-165transcription factor bHLH30
RefseqXP_024019423.11e-165transcription factor bHLH30
SwissprotQ9S7Y11e-103BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2P5DQ220.0A0A2P5DQ22_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010093397.11e-164(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]