PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07851.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 461aa    MW: 51627.4 Da    PI: 10.44
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07851.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07845233
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......T CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......k 33
                     g W t+E++ll  av ++G+++W+t+a+++        
        PK07851.1  8 GEWGTWEELLLGGAVLRHGTRDWDTVAAELRaralcsY 45
                     79***************************996555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.2E-6858IPR001005SANT/Myb domain
SuperFamilySSF473702.22E-17259369IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.7E-16260372IPR001487Bromodomain
SMARTSM002977.9E-14265369IPR001487Bromodomain
CDDcd043692.89E-14272364No hitNo description
PfamPF004396.6E-12273353IPR001487Bromodomain
PROSITE profilePS500149.918280350IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVTAVMEGEW GTWEELLLGG AVLRHGTRDW DTVAAELRAR ALCSYNYTGQ VCKAKYEDLQ  60
HRYRGCTAWF EELRKKRMAE LRQALDHSED SIGSLETKLE TLKAEKGVSR VNYASSQTES  120
PSTLQKLEGV DSFSKESKDG LSAGSFTLET RTSWSAECLN PCTVSAEETE TKLKDLHSFK  180
TAEACNTEKL ADHVHERQGS ILKKRRGKRK RKDCSRDIKE SSVGESGFLD SAEAVTAFRS  240
KENTTSDCGE VSRSSGLDNQ SKGTKKDSID DLLKIFNSIV EHKCASTFRR RLDSQKRGRY  300
KKMIRKHMDF DTLRSRITSR SVMSVKELFR DLLLLANNSL VFYSKNTREH KSALLLRDLT  360
TKTLLQHFKD STSIKAASAN ISVITTIQSS PPPLPPQVKP RSNHSGNNKN SAVKPTHPKI  420
NDAAKSPKKG SSQARRVGRK SNTQQQPTVA PAKGRKRGRV R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201208LKKRRGKR
2202207KKRRGK
3204212RRGKRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105623.10.0uncharacterized protein LOC21384416
TrEMBLA0A2P5G0U60.0A0A2P5G0U6_TREOI; Bromodomain containing protein
STRINGXP_010105623.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-24DNA-binding bromodomain-containing protein