PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07850.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 350aa MW: 37382.4 Da PI: 8.6426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07850.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.1e-11	284	329	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq PK07850.1 284 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 329 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.005	278	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-15	281	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-10	282	333	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	283	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	284	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-8	284	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MYTSNSSSSS QKPTGQPPTG LTRYGSAPGS LLATAMDSVI GPDREFNTLR SPLGGHYFSG 60 DSSSITSDSS CKVNSSLHRS HGLNEIAARI GSSSSSSSSS ASVSASASPS SSLVRQRSSP 120 AGFFSHLSNV VTDKNGFSVT RGSGGYGSQQ GGTNCGPGVS RLKSQLSFTR QDCLSQISEV 180 SENVIDGMSS ENGHHNASHS FATSFGMDSW DNNTNSIVFS APQSKRAKNM DGDLYNCLNV 240 LDTQFSLPQT TLEMAAVEKL LHIPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK 300 LQDLVPNMDK QTSYADMLDL AVQHIKGLQN QVKKLHTELE NCTCGCKQNT

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MYTSNSSSSS QKPTGQPPTG LTRYGSAPGS LLATAMDSVI GPDREFNTLR SPLGGHYFSG  60
DSSSITSDSS CKVNSSLHRS HGLNEIAARI GSSSSSSSSS ASVSASASPS SSLVRQRSSP  120
AGFFSHLSNV VTDKNGFSVT RGSGGYGSQQ GGTNCGPGVS RLKSQLSFTR QDCLSQISEV  180
SENVIDGMSS ENGHHNASHS FATSFGMDSW DNNTNSIVFS APQSKRAKNM DGDLYNCLNV  240
LDTQFSLPQT TLEMAAVEKL LHIPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK  300
LQDLVPNMDK QTSYADMLDL AVQHIKGLQN QVKKLHTELE NCTCGCKQNT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887123.1	1e-179	transcription factor bHLH128 isoform X3
Swissprot	Q8H102	5e-96	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2P5FCM9	0.0	A0A2P5FCM9_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_008380690.1	1e-163	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]