PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07805.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | FAR1 | ||||||||
Protein Properties | Length: 99aa MW: 11505.9 Da PI: 9.0987 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.1 | 3.3e-19 | 16 | 84 | 2 | 74 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++d+ PK07805.2 16 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQDD 84 ****************************************999877....9******************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-17 | 16 | 84 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
PHDGIEFESH EDAYTFYKEY AKSVGFGTAK LSSRRSRASK EFIDAKFSCI RYGNKQQSDD 60 AINPRPSPKI GCKASMHVKR KQDDESLYTF VWLMQTWFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028778755.1 | 3e-47 | protein FAR1-RELATED SEQUENCE 4 | ||||
Swissprot | Q6NQJ7 | 4e-43 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A061GTS8 | 4e-45 | A0A061GTS8_THECC; Far1-related sequence 4 isoform 1 | ||||
TrEMBL | A0A1R3I689 | 6e-46 | A0A1R3I689_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NMJ7 | 2e-45 | A0A2H5NMJ7_CITUN; Uncharacterized protein | ||||
STRING | EOY32573 | 6e-46 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 5e-41 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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