PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07653.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRF
Protein Properties Length: 419aa    MW: 45465.6 Da    PI: 10.4003
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07653.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.43e-24110153144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs++v+ ++k+CE H+hrgr+rsrk +e
  PK07653.1 110 DPEPGRCRRTDGKKWRCSKNVVLDQKYCEQHMHRGRQRSRKLVE 153
                79***************************************987 PP
2WRC67.12.4e-21299335238
        WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                 epgrCrRtDGKkWRC+r+v++++k+C rH+hrg ++
  PK07653.1 299 LEPGRCRRTDGKKWRCRRDVIPDQKYCARHMHRGAKK 335
                59********************************876 PP
3QLQ34.37.5e-134579337
        QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               F++ Ql +Lk+Q l+y +++++ PvP +Ll+ i+k
  PK07653.1 45 FSWGQLLQLKHQSLIYSHIVNGIPVPFHLLATISK 79
               9999**************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.7E-44379IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166614.9224479IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-74577IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.036110154IPR014977WRC domain
PfamPF088799.5E-21111153IPR014977WRC domain
PROSITE profilePS5166721.888298342IPR014977WRC domain
PfamPF088795.5E-19300338IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEVEYCGCGR GVRNNXTVVM HGDGGKEKRS SGVKPLIKCE GNCGFSWGQL LQLKHQSLIY  60
SHIVNGIPVP FHLLATISKT LLPPLSTTLL NPYPFTGFSP QGFYCKNMVD PEPGRCRRTD  120
GKKWRCSKNV VLDQKYCEQH MHRGRQRSRK LVEVAEIGTS LSIPKTPEKS VSQSLQKSSS  180
NIPVSVGLQL MTTLSSNITS VSHGNATPSS SFSTKRVTNV TAPCITTTNI AAITKSNMSA  240
GNAGKVVSDK YFGSIGRSNN TNASSNMSQG LGFSPRSVLH LQVLRSNGLH TDYRNGIELE  300
PGRCRRTDGK KWRCRRDVIP DQKYCARHMH RGAKKLVKVF PPLPAIAASS AATDSARCPP  360
TTAIPSRVNP VSPNTKLSIS IQDSPQLTNI IEKSDSSSSS DTTISDTSVA AYTISKLPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092861.21e-124growth-regulating factor 9
TrEMBLA0A2P5AMM31e-129A0A2P5AMM3_TREOI; Growth-regulating factor
STRINGXP_010092861.11e-124(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.15e-41growth-regulating factor 9