PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07593.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 107aa    MW: 11295.6 Da    PI: 11.3431
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07593.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.8e-203467134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  PK07593.1 34 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 67
               ********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-202880IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-142968No hitNo description
Gene3DG3DSA:3.30.50.102.4E-163267IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.4663264IPR000679Zinc finger, GATA-type
CDDcd002025.57E-123365No hitNo description
PfamPF003207.2E-183468IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
XHVMKINIKH PGSPTDHSTS SNSSNNNATI IRVCSDCNTT KTPLWRSGPR GPKSLCNACG  60
IRQRKARRAM AAAAAAAAGS TNGTVVPVDK PSMKNTNKEK KSKSTTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122025.12e-26putative GATA transcription factor 22
TrEMBLA0A2P5EIK11e-27A0A2P5EIK1_TREOI; GATA transcription factor
STRINGXP_007136825.11e-25(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-20GATA family protein