PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GATA | ||||||||
Protein Properties | Length: 107aa MW: 11295.6 Da PI: 11.3431 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.9 | 3.8e-20 | 34 | 67 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + PK07593.1 34 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 67 ********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-20 | 28 | 80 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-14 | 29 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-16 | 32 | 67 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.466 | 32 | 64 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.57E-12 | 33 | 65 | No hit | No description |
Pfam | PF00320 | 7.2E-18 | 34 | 68 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 34 | 59 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
XHVMKINIKH PGSPTDHSTS SNSSNNNATI IRVCSDCNTT KTPLWRSGPR GPKSLCNACG 60 IRQRKARRAM AAAAAAAAGS TNGTVVPVDK PSMKNTNKEK KSKSTTT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122025.1 | 2e-26 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2P5EIK1 | 1e-27 | A0A2P5EIK1_TREOI; GATA transcription factor | ||||
STRING | XP_007136825.1 | 1e-25 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-20 | GATA family protein |