PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 746aa MW: 84743.6 Da PI: 4.7493 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.7 | 1.9e-113 | 364 | 737 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lL++cA+avss+d + a +lL+++++++sp+gd qRla yf+++L arla+ +++++ + l s ++ + s+ l+a++l +P+ kf+ + aN+ PK07467.1 364 FLLISCAQAVSSDDRRTAYELLKKIRQHSSPNGDGSQRLAYYFANGLDARLAGtgNGTGTGAVLFGSLLARVKASDLLKAFHLNLSSCPFKKFGMFFANK 463 58**************************************************943445556666778888889*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 + l+ +e+++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g ke++eetg+rLak++e++gvpf++n++v++++e++++e++++++ PK07467.1 464 MFLQVAEKATTLHIVDFGILYGFQWPIFIQHLSRRDGGPPNLRITGIEFPQNGfrPKERIEETGRRLAKYCERFGVPFRYNAIVVTKWETIRVEDIKIES 563 ****************************************************9*********************************************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E++aVn+ l+l+++l+e+v+ rd+vL+l+++l+P ++v+ + ++n++ F++rf eal ++salfd+l++ ++r++eer +Er+l+g+ei nv+ PK07467.1 564 NEVVAVNCLLRLKNVLEETVENCP-RDAVLRLIRKLNPAIFVHNIVNGSYNAPFFVTRFREALFHFSALFDMLDTIIARQNEERLLYERKLFGQEILNVI 662 ****************88888777.*************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ace+++r er et+++W+ r +aGF+++pls++ +++ k lr+ + + ++++e+s+++++gWk+r ++++S+W PK07467.1 663 ACEEEKRMERPETYKQWQVRCLRAGFRSLPLSKELMSKFKEKLRTWYHKDFEIDEDSNWMLQGWKGRIVFATSCW 737 ***********************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.433 | 336 | 718 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-111 | 364 | 737 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MDPSFSDFSD FTNSFEIENW TSIPNSNDYS VISDEYTVNQ YSSEFDFVDD YPNLFTPPDP 60 DPGNFMPSIN LPSLEDPSFP STTLSPDGNS YTPPLSVNPG SDSPNDESEF SIYVLKFINQ 120 ILMEENMEQE TNTLNDPLGL QVTEKSFYDV LGESYPYPAN QSPTDKKAET PDSNFSVSSS 180 DYGSNSHDAN SPQLLSDLGD HNSSLQSFVP GENNFQFDLA TAQKFFRDSD SVSQFQRGFE 240 EASKFLPKGN QLIIDLESNG FSSQLKTDDA VVKIESESPP NGLRGRKNHE REDDDSEEER 300 SNKQSAHYID DSELSEMFDK VLLQVEPVDN EARKALQPVD SNASSGKGRG KKQNKKSETV 360 DLRFLLISCA QAVSSDDRRT AYELLKKIRQ HSSPNGDGSQ RLAYYFANGL DARLAGTGNG 420 TGTGAVLFGS LLARVKASDL LKAFHLNLSS CPFKKFGMFF ANKMFLQVAE KATTLHIVDF 480 GILYGFQWPI FIQHLSRRDG GPPNLRITGI EFPQNGFRPK ERIEETGRRL AKYCERFGVP 540 FRYNAIVVTK WETIRVEDIK IESNEVVAVN CLLRLKNVLE ETVENCPRDA VLRLIRKLNP 600 AIFVHNIVNG SYNAPFFVTR FREALFHFSA LFDMLDTIIA RQNEERLLYE RKLFGQEILN 660 VIACEEEKRM ERPETYKQWQ VRCLRAGFRS LPLSKELMSK FKEKLRTWYH KDFEIDEDSN 720 WMLQGWKGRI VFATSCWVSA EGPYSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-52 | 366 | 737 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420703.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P5D669 | 0.0 | A0A2P5D669_TREOI; GRAS transcription factor | ||||
STRING | XP_008245986.1 | 0.0 | (Prunus mume) | ||||
STRING | XP_009364376.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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