PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07332.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 684aa    MW: 76305 Da    PI: 6.2785
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07332.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23126226198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++ +k+a+e+     + +++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v+
  PK07332.1 126 FCKILTASDTSTHGGFSVLRKHATEClpsldMTQTTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVG 223
                99****************************9555566679************************************************..3489999*** PP

                EE- CS
         B3  96 vfr 98 
                v+r
  PK07332.1 224 VRR 226
                *98 PP
2Auxin_resp103.72.2e-34252331183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k++vGmRfkm+fe+eds+err++Gt+vgv dl++ +W nSkWrsLk
   PK07332.1 252 ASHAFNTRTLFVVYYKPRT--SQFIIGLNKYLDAMNNKLTVGMRFKMRFEGEDSPERRFTGTIVGVGDLSS-QWANSKWRSLK 331
                 689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-41115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-39118241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-19124226No hitNo description
SMARTSM010193.8E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984126228IPR003340B3 DNA binding domain
PfamPF023623.0E-21126226IPR003340B3 DNA binding domain
PfamPF065073.9E-32252331IPR010525Auxin response factor
PfamPF023097.9E-7555606IPR033389AUX/IAA domain
SuperFamilySSF542772.22E-10567646No hitNo description
PROSITE profilePS5174523.782570662IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAHLEGGSSI SRSETGPEDS IFKELWNACA GPLVEVPRPG ERVFYFPQGH MEQLEASTNQ  60
EVNQQLPLFN LPSKILCSVL NIEYLAEQET DEVYARITLV PETNQTEPTS PDPCVDEPAR  120
PNVHSFCKIL TASDTSTHGG FSVLRKHATE CLPSLDMTQT TPTQELAAKD LHGYEWKFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDNGEL RVGVRRLACQ QSLMPSSVIS  240
SHSMHLGVLA TASHAFNTRT LFVVYYKPRT SQFIIGLNKY LDAMNNKLTV GMRFKMRFEG  300
EDSPERRFTG TIVGVGDLSS QWANSKWRSL KIQWDEHASI PRPERVSPWE IEPFVASSAP  360
LNLTQPVTKN KRPRPVDIPQ SEITLNSAAS AFWYQGSTTQ SELTQLGSSA DVQSSDSQAV  420
WPLKNKDISN GNYYGSMFRS EGIWPSPHVG ISLNLFSEST GDAKTVSARS LLSGCDSSIS  480
SRVNDQYENV AKLDASVGCR LFGINLTCNS PPFPSHLERE SPSLVMPAAV SEVDKFHNQV  540
ITNLTKDQKV MSESPQKDTQ CKHSFLSSRS RTKKVQMQGV AVGRAIDLTT LNGYDDLIDE  600
LEKMFEINGE LRPPSKWAVV FTDDENDMML VGDDLWTDFC KMVKKIFIYS SEEVKKMSNF  660
KLRGSSVECE GNTISLDSEH RAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1761935417355Auxin response factor 1
4ldw_A1e-1761935417355Auxin response factor 1
4ldw_B1e-1761935417355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888765.10.0auxin response factor 18 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P5FHL90.0A0A2P5FHL9_TREOI; Auxin response factor
STRINGXP_010100721.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9