PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07315.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 325aa    MW: 36172.6 Da    PI: 9.2363
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07315.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.9e-20238271134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++t+Tp+WR+gp+g+ktLCnaCG++yr+ +
  PK07315.1 238 CTHCQVTSTPQWREGPSGPKTLCNACGVRYRSGR 271
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.532232268IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-17232282IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-15235295No hitNo description
Gene3DG3DSA:3.30.50.104.8E-15236269IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.79E-16237294No hitNo description
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
PfamPF003201.2E-17238271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVKKLDCDEE HPKDFDGAKD IDLFDMLNFP LEDVEVDIGK DDWNNIPLPD LPLDYCLSFP  60
VGVGVFPNDT SKPNKILPTS YEKSCRLKQL PTASSAAETE NTIKSSNAGS KLLSHDSTDV  120
KSVRLFNSSS PVSTLESTNA YFTENQRHVD KKFIAPKRRA RSKRQRFSNL DRLRSLSFFP  180
PTCSSFASVY PESDSGTVDD GKMFKPCVKK PVRKGGGETR NNKLKEPNTT TTTTTKRCTH  240
CQVTSTPQWR EGPSGPKTLC NACGVRYRSG RLFPEYRPAA SPTFIPSVHS NSHKKVIEMR  300
NKGGGTSVEH NYGSQPGNSV RHVFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161PKRRARS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017101.14e-83GATA transcription factor 11-like
TrEMBLA0A2P5DU176e-88A0A2P5DU17_PARAD; GATA transcription factor
STRINGXP_010089971.12e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.22e-45GATA transcription factor 10