PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07211.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 375aa    MW: 42710.4 Da    PI: 10.1177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07211.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07279326448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G g+W+ I r +      Rt+ +++++w+++l
        PK07211.1 279 WTITEVTKLVDGIAEYGVGRWTDIKRFLFttsVYRTPIDLRDKWRNLL 326
                      9*******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-11270329IPR009057Homeodomain-like
PROSITE profilePS5129414.63271330IPR017930Myb domain
SMARTSM007171.8E-6275328IPR001005SANT/Myb domain
CDDcd116601.73E-15277327No hitNo description
SuperFamilySSF466891.05E-15277344IPR009057Homeodomain-like
PfamPF002491.8E-5279326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
LEGLLDEVEE IEDLHAADGL ASPSEDFLLE IGFTGKPSGM DYGPPCWGSL TRNVSPASQS  60
PGLSGSSNSA VGMSESSSVT IQESDFKNDY SLLKSENHEL PALKYRRRCE KPVSLEFRNP  120
NLSDEDDDED PLLSSMLLNK NGRNLGDTSK SGAPRREKRL RKPTQRYIEE FSDKKSKHLK  180
GQGKFSAVTK NRQLKIRSPD ELHLVTGTLS SVPEEELPSE TTIQVVPEVR ARRGRPKKQV  240
SVLVTKPKEE VFTSDSDDDR VKKKKRSEKH DRRKHQRMWT ITEVTKLVDG IAEYGVGRWT  300
DIKRFLFTTS VYRTPIDLRD KWRNLLRASS VQKLKKKEAE EKQLHALRPL PKSLIRRVRE  360
LAKIHPYPRE RGQKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264DRVKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028719.11e-164uncharacterized protein LOC21407106
TrEMBLA0A2P5FV801e-176A0A2P5FV80_TREOI; GAMYB transcription factor
STRINGXP_010107511.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-20TRF-like 6