PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07026.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 576aa MW: 64503.1 Da PI: 6.4644

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07026.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424.8	7.1e-130	206	575	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+ ++++d e ++ + + + ++s +g+p+qRl ay++e++ ar s++++y+al+++e + s+e l+++++++e++P+lkf++++aN PK07026.2 206 LKNLLIACAKSLAENDIETFDKQIGKARAIVSISGEPIQRLGAYMVEGMVARKEASGTNIYRALRCREPE---SKELLSYMQILYEICPYLKFGYMAANG 302 5789***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI ea +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p ++ + + le++g+rL + + +++p+efn+ v d++ e+L+++p PK07026.2 303 AIAEACRNEDRIHIVDFQIAQGTQWLTLLQALAARPDGPPHVRITGIDDPVNHyaRGDGLEAVGKRLVAISQDFKIPVEFNA-VPVFAPDVTREMLDIRP 401 ***********************************************99999**********************.688899******* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEalaVn+ lqlh+++desv+++++rd +L++vksl Pkvv++veqe+++n+++F++rf+ea+++y a+f+s++++lpr+s+ ri+vE+++l+r+ivnvv PK07026.2 402 GEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKSLYPKVVTLVEQESNTNTTPFFHRFVEAMDFYLAMFESIDVTLPRDSKYRISVEQHCLARDIVNVV 501 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+erhe l+kW++rl++aGFk++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW PK07026.2 502 ACEGRERVERHELLGKWKSRLTMAGFKQYPLSSYVNSVIRSLLRCYS-EHYTLAEKDGAMLLGWKDRNLISASAW 575 ***************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.767	180	557	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-127	206	575	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MDSHQLFGIS VTGAALPYTT SHPTTVPSLP NRLLGSLKFD IGNSPSSPFS TNFDSDNSLT 60 TLSDSQEQYS STENNLSGVS TPPCNSPLDT NSYCLYPCGK SLLQNANSSQ NFKHALLELE 120 TALMGPDDDV DEHRLTRRKP SHVEGPSEQS WKAERPRGQQ PGLTQRQTFL ASRPRQPVEV 180 ARTEKRHKLM EEDSLHQQGL PSLDNLKNLL IACAKSLAEN DIETFDKQIG KARAIVSISG 240 EPIQRLGAYM VEGMVARKEA SGTNIYRALR CREPESKELL SYMQILYEIC PYLKFGYMAA 300 NGAIAEACRN EDRIHIVDFQ IAQGTQWLTL LQALAARPDG PPHVRITGID DPVNHYARGD 360 GLEAVGKRLV AISQDFKIPV EFNAVPVFAP DVTREMLDIR PGEALAVNFP LQLHHTPDES 420 VDVTNPRDGL LRMVKSLYPK VVTLVEQESN TNTTPFFHRF VEAMDFYLAM FESIDVTLPR 480 DSKYRISVEQ HCLARDIVNV VACEGRERVE RHELLGKWKS RLTMAGFKQY PLSSYVNSVI 540 RSLLRCYSEH YTLAEKDGAM LLGWKDRNLI SASAWH

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MDSHQLFGIS VTGAALPYTT SHPTTVPSLP NRLLGSLKFD IGNSPSSPFS TNFDSDNSLT  60
TLSDSQEQYS STENNLSGVS TPPCNSPLDT NSYCLYPCGK SLLQNANSSQ NFKHALLELE  120
TALMGPDDDV DEHRLTRRKP SHVEGPSEQS WKAERPRGQQ PGLTQRQTFL ASRPRQPVEV  180
ARTEKRHKLM EEDSLHQQGL PSLDNLKNLL IACAKSLAEN DIETFDKQIG KARAIVSISG  240
EPIQRLGAYM VEGMVARKEA SGTNIYRALR CREPESKELL SYMQILYEIC PYLKFGYMAA  300
NGAIAEACRN EDRIHIVDFQ IAQGTQWLTL LQALAARPDG PPHVRITGID DPVNHYARGD  360
GLEAVGKRLV AISQDFKIPV EFNAVPVFAP DVTREMLDIR PGEALAVNFP LQLHHTPDES  420
VDVTNPRDGL LRMVKSLYPK VVTLVEQESN TNTTPFFHRF VEAMDFYLAM FESIDVTLPR  480
DSKYRISVEQ HCLARDIVNV VACEGRERVE RHELLGKWKS RLTMAGFKQY PLSSYVNSVI  540
RSLLRCYSEH YTLAEKDGAM LLGWKDRNLI SASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-62	213	575	26	378	Protein SCARECROW
5b3h_A	2e-62	213	575	25	377	Protein SCARECROW
5b3h_D	2e-62	213	575	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244327.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2P5CK43	0.0	A0A2P5CK43_PARAD; GRAS transcription factor
STRING	XP_008244327.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4299	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-164	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]