PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11419.2 Da PI: 10.6046 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 1 | 34 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++ lG++ W++Ia++++ gRt++++k++w+++ PK07010.1 1 IIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 34 5899*******.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0019 | 1 | 37 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 1 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.32E-11 | 1 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-11 | 1 | 34 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.564 | 1 | 39 | IPR017930 | Myb domain |
CDD | cd00167 | 1.36E-9 | 1 | 35 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
IIQLHSVLGN KWSAIAARLP GRTDNEIKNY WNTHIRKRLL RMGIDPVTHA PRLDFLDLSS 60 ILAANSSSFC NPSLLNLSSL LGSTQPLFNP ELLRLASTVL SLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095853.1 | 2e-53 | transcription factor MYB102 | ||||
Refseq | XP_015881000.1 | 2e-53 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 1e-41 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | W9R0B6 | 4e-52 | W9R0B6_9ROSA; Transcription factor | ||||
STRING | XP_010095853.1 | 6e-53 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16895 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-41 | MYB-like 102 |
Publications ? help Back to Top | |||
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