PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06970.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 509aa    MW: 56277.4 Da    PI: 6.1219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06970.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16300346455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  PK06970.1 300 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 346
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-17299350No hitNo description
SuperFamilySSF474598.11E-21299374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-21300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDDDYSTHPN SSGHSRPPRK SFLPEDDIME LLWQNGQVVT QSQNQRSSSA MRKLSPPFKY  60
DAVPPADMES RLSQAQAHHN HLHLQEQQQH LFMQEDEMSS WLHHPLVEDP QFSTDLFYPQ  120
LSETTTTTAT NSTPPLPMRL SQFSEIRPPP PPPVSMASRP PIPPARTTEN FGHFSRLAKP  180
STVEFNPSCS KTAVDSCDTP AAVGPNLRSP EDTSFGNLGE GGEGKEIRCE VTVISSPGDS  240
SASAEPLVAA KTMAASDDRK RKGVEIDDAE CQSEEVEFES GDGKKHARGA STKRSRAAEV  300
HNLSERRRRD RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCGMVP  360
MMFPGMQQYM PPMGMGMGIG MGMGMEMGLN RPIMPFPNVL AGSPMSPPAT AAHLGPRFPM  420
PAFHMPPVPT TEPPRGQATN QLDYMFQPFP TPQNPNQSRV PNFPDPYQQY FGSQQMQLPL  480
QQNPAMVQPS TSKPSTSRGP ENPENHQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109673.20.0transcription factor PIF1
TrEMBLA0A2P5BRH60.0A0A2P5BRH6_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010109673.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-54phytochrome interacting factor 3-like 5