PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06948.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 755aa    MW: 83575.5 Da    PI: 5.5623
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06948.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21101156156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  PK06948.1 101 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 156
                7999************************************************9877 PP
2START231.91.8e-722714943206
                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ++ ++elvk+a+a+ep+W +s+    e++n+de+l++f+ +k+       +s+ea+r++gvv+ +l++lv+ ++d++ qW+e+++    ka+t++vis+
  PK06948.1 271 VNQSMEELVKMATAGEPLWIRSVetgrEILNYDEYLKEFAVEKSgmnngpkRSVEASREVGVVFVDLPRLVQGFMDVN-QWKEMFPcmisKAATVDVISN 369
                57889**********************************9998899********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w++vdvS+d+ +++  ++s+++++++pSg++ie+ksngh+kvtwveh +++++++h +
  PK06948.1 370 GeaenknGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAVVDVSIDNVEENI-DASLIKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTM 468
                *******************************************************98.9***************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +r +v+sgla+ga++w atlq qce+
  PK06948.1 469 YRTIVNSGLAFGARHWIATLQLQCER 494
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-2487152IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2190159IPR009057Homeodomain-like
PROSITE profilePS5007118.2298158IPR001356Homeobox domain
SMARTSM003898.3E-19100162IPR001356Homeobox domain
PfamPF000461.0E-18101156IPR001356Homeobox domain
CDDcd000866.55E-17105156No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084840.727260497IPR002913START domain
SuperFamilySSF559619.34E-35262494No hitNo description
CDDcd088751.71E-115264493No hitNo description
SMARTSM002343.0E-74269494IPR002913START domain
PfamPF018522.8E-58270494IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-6271305IPR023393START-like domain
Gene3DG3DSA:3.30.530.203.0E-6379489IPR023393START-like domain
SuperFamilySSF559619.89E-15524744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MGVDMSNNNP NSRTKDYFAS PALSLSLAGI FRDAGAAAAA AANIEVEEGE EGSGGGGGRK  60
EDTVEISSET SGAARSRSDD EFDGEGDEDD GDGDKTKKKK RKKYHRHTAE QIREMEALFK  120
ESPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKSE IDKLRDENKS  180
LREQINKSCC PNCGSATVAR DPSNSTDEQQ LRIENAKLKA EVEKLRATIR KYPMGTSSPS  240
CSAGNEQETR SSLEFYTGIF GLEKSRMMEI VNQSMEELVK MATAGEPLWI RSVETGREIL  300
NYDEYLKEFA VEKSGMNNGP KRSVEASREV GVVFVDLPRL VQGFMDVNQW KEMFPCMISK  360
AATVDVISNG EAENKNGAVQ LMFAELQMLT PMVPTREVYF VRYCKQLSAE QWAVVDVSID  420
NVEENIDASL IKCRKRPSGC IIEDKSNGHC KVTWVEHLEC QKSTVHTMYR TIVNSGLAFG  480
ARHWIATLQL QCERLVFFMA TNVPMKDSTG VATLAGRKSI LKLAQRMTWS FCRAVAASSY  540
NTWTKVSSKT GDDIRITSRK NMNDPGEPLG LILCAVSSVW LPVSANVLFD FLRDENHRNE  600
WDIISSGGAV ESMANLSKGQ DRGNAVSIQT VNSKDNSMWI LQDCCTNPFE SMVVYAPVNI  660
SGMQSVMTGC DSSNLAILPS GFSILPDGIE SRPLVITSRP EEKSSEGGSL LTVAFQILTN  720
SSPTAKLTME SVDSVNTLIS CTLKNIKTSL QCEEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KKKKRK
296102KKKKRKK
398102KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098082.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2P5ES900.0A0A2P5ES90_TREOI; Octamer-binding transcription factor
STRINGXP_010098082.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]