PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 550aa MW: 59672.6 Da PI: 5.8014 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 366 | 408 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L PK06940.1 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 408 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.682 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 362 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 365 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 365 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 366 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-13 | 366 | 412 | No hit | No description |
CDD | cd04873 | 1.13E-7 | 479 | 539 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MLPRSNGAVW IDGDEEDAAS SWTKNNEGVV VEPNNNNKEE EMGLGANSFS SFKTMLETDW 60 YMNNALNPTP SSHHLHGLSL PPPPPNNTTT NHHDISFCNN PVTDHNNNLL LQPIDSSASC 120 SPSQAFNLDP SHSHNFLQAK SCFSSLLNVV NNNPFDNGFD LSCESGFLNN PVLMGFAGLN 180 SQQNQMGGTT PELSSSSDFP GNRLLPLSDD AAALGGGFSP TGFEGFDGSA GSALFLNNRA 240 KVLRPLEVFP PVGAQPTLFQ KRAALRQNSG GADKLGNLDV SASTRFGKSL ESFEKKRKKS 300 IDDGEIEESI DVSGLNYDSD DANEYSKLED NTNKNGGGSN SNANSTVTGG GDQKGKKKGL 360 PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ RINDLHNELE 420 STPPGSLLPP SSSFHPLTPT PPTLPCRVKE ELFPGSLPSP KNQPARVEVR LREGRAVNIH 480 MFCARRPGLL LSTMRALDNL GLDIQQAVIS CFNGFALDVF RAEQCREGQE VLPEQIKAVL 540 LDSAGFHGTI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 298 | KKRKK |
2 | 355 | 373 | KKKGLPAKNLMAERRRRKK |
3 | 367 | 374 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA. Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:17416732, ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, cold stress and abscisic acid (ABA) treatment. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021823108.1 | 0.0 | transcription factor ICE1 | ||||
Swissprot | Q9LSE2 | 1e-168 | ICE1_ARATH; Transcription factor ICE1 | ||||
TrEMBL | A0A2P5D6E7 | 0.0 | A0A2P5D6E7_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | EOY02934 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2414 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 1e-146 | bHLH family protein |