PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06916.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 405aa    MW: 45892.8 Da    PI: 6.4684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06916.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12220266354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h + Er RR ++ ++++ L++l+P++     +K++ a+++  A+eYI++L
  PK06916.1 220 TKHFASERHRRVQMSDKYHVLKSLVPNP-----TKNDRASVVGDAIEYIREL 266
                78**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-12217286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.51E-14217289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.316217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9220266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-9220270No hitNo description
SMARTSM003532.1E-9223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
NSQEEAAINM ELQQQLAFNM DNSYNTDINT TAQLVSFDHL QHHNHHHHQQ QPQWDNEDMS  60
YNNNNHRHNQ HHQEPADLLS LFHLPRCSAT SSSSITFTNP TPPKTANFPN TSLAFLGDVP  120
MGTDSPPSSS ILYDPLLHLN LPPQPPLFKD LFQPLPNGYA FPSSSSRNGS LFSNGVMDMD  180
GEGSGGVYQD GLEGMQFESG VLEFARDRSY IDRGRDGRGT KHFASERHRR VQMSDKYHVL  240
KSLVPNPTKN DRASVVGDAI EYIRELRRTV NELKILVEKK RRGIEANKRR KSEEDTAGEV  300
ENCNIKPEPD HSYIRSSWLQ RKSKDTEVDV RIIDDEVTIK LVQRKKINLL LTASRVLDEL  360
QLDLRHVAGG HVGDTYSFLF NTKIYEGSSL YASAIANKLM DVLDX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413510.11e-158transcription factor bHLH10
RefseqXP_020413511.11e-158transcription factor bHLH10
TrEMBLA0A2P5C6N50.0A0A2P5C6N5_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010097712.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-69bHLH family protein