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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK06841.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 265aa MW: 29996.7 Da PI: 5.9378 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 42.7 | 1e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
Er+RR+++N++++ Lr ++Pk + K++Ka+i + A+eYI++L
PK06841.1 58 VSERNRRKKLNDRLFALRAVVPKiS------KMDKASIIKDAIEYIQKL 100
57*********************66......****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.152 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.44E-16 | 52 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.66E-13 | 54 | 105 | No hit | No description |
| SMART | SM00353 | 3.5E-14 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 57 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.7E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 265 aa Download sequence Send to blast |
MENIGDEYKH YWETTMFFQT EELDHSWGGG LEDAAFSGYY DSSSPDGAAS SAASKNIVSE 60 RNRRKKLNDR LFALRAVVPK ISKMDKASII KDAIEYIQKL HEEERNIQAE IIELESNHNK 120 GSHNNNNNNN NKNLGGNYDH FDQELPILLR SKKKKIDQQL YDSNGSRCSG SISPIEDLEL 180 RVTYMGEKTL VVSLTCSKRT DTMVKLCEVF ESLKLKIITA NITAFSGRLS KTVFIEADED 240 EKEHLKIKIE TAIAALNDPR SPMSI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008223870.1 | 1e-139 | PREDICTED: transcription factor bHLH35 | ||||
| Swissprot | Q2HIV9 | 3e-89 | BH035_ARATH; Transcription factor bHLH35 | ||||
| TrEMBL | A0A2P5C4L0 | 1e-141 | A0A2P5C4L0_PARAD; Basic helix-loop-helix transcription factor | ||||
| STRING | XP_008223870.1 | 1e-139 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3389 | 33 | 69 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57150.1 | 5e-79 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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