PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06779.5

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 104aa MW: 11430.5 Da PI: 10.4678

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06779.5	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	83	103	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 + C+ C+k F r nL+ H r PK06779.5 83 FICEVCNKGFQREQNLQLHRR 103 89*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.09E-5	80	103	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-6	82	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.014	83	104	IPR007087	Zinc finger, C2H2
Pfam	PF12171	1.2E-5	83	104	IPR022755	Zinc finger, double-stranded RNA binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
SSSVSFYGSS SFRSEQENQN NQILLQQQPP NSSTTFTTAT TTTTSSIAST TAPPKKRRNQ 60 SASNSDAEVV ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894322.1	6e-33	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	2e-26	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A2K1YRN5	9e-28	A0A2K1YRN5_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_2.89	4e-29	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15353	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-26	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]