PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06745.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 438aa    MW: 47741.3 Da    PI: 9.4763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06745.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049180201323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                C+ Cg++F+  ++L+ H+ + H
  PK06745.1 180 CSQCGEVFPKIESLELHQAVrH 201
                ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933178206IPR007087Zinc finger, C2H2
PROSITE patternPS000280180201IPR007087Zinc finger, C2H2
SuperFamilySSF563996.81E-24203329No hitNo description
Gene3DG3DSA:3.90.228.108.8E-17205433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563996.81E-24365433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
XFFMALLTFT PEPTDSKKPT QSKRKKRPKQ QQQQQQQKPP SSWDQIKNLL TCKQIEGSRV  60
HDPSKNNTTT VGYSKLGSSC SSICSFRDVV HGNTRVVHRA DNSPENSTAG QEAGLLSRKG  120
ASGSSTRSTT SGSARSNGGA GYTSSSRGMQ FRKLSGCYEC HMIVDPSRYP IIPRSTISAC  180
SQCGEVFPKI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDNP IFQIERILKV  240
HNTQRTIQRF EDCRDAVKTR ALNSTRKNPR CAADGNELLR FHCTTLTCSL GARGASNLCG  300
PVPGCGVCTI IRHGFQGNKS GGSNHNNNNN NSTTTTTQTQ CSESSKGVLT TASSGRAHDS  360
LRCTDGRRAM LVCRVIAGRV KRYADDAPTE EDSVSLGSSY DSVAGYAGVY SNLEELIVFN  420
PRAILPCFVV IYKALDSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KRKKRPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104443.10.0uncharacterized protein LOC21399114
TrEMBLA0A2P5F7Z40.0A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_010104443.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-169C2H2-like zinc finger protein