PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23574.5 Da PI: 7.781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k F ++ L H+ H PK06624.1 41 YKCRTCNKIFYSHQALGGHQTIH 63 9***************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.87E-9 | 40 | 63 | No hit | No description |
Pfam | PF13912 | 5.7E-4 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.099 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.87E-9 | 122 | 149 | No hit | No description |
Pfam | PF13912 | 1.6E-8 | 127 | 149 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.67 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
XLATGFGSLK PSCLSEKKTK FDYSNSGSEM LENSPKKNGC YKCRTCNKIF YSHQALGGHQ 60 TIHRTPKNCS TLQIYSRQTV TQFEDFPGIE AIGNSTKTDF NEVSLDLVLE VDNNRVSTMT 120 SFEIKEHKCP ICFKIFGSGQ ALGGHKRAHI VKDTESGPEP INILKHHSIC GVSDVLDGVP 180 MTPGNEANTE VDLKSWWLKN GQKHELLVGL IPN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879805.1 | 6e-54 | uncharacterized protein LOC107415907 | ||||
TrEMBL | A0A2P5ED78 | 1e-84 | A0A2P5ED78_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010089610.1 | 4e-52 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13359 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 5e-18 | C2H2-like zinc finger protein |