PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06624.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 213aa    MW: 23574.5 Da    PI: 7.781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06624.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000994163123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC  C+k F ++  L  H+  H
  PK06624.1 41 YKCRTCNKIFYSHQALGGHQTIH 63
               9***************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.87E-94063No hitNo description
PfamPF139125.7E-44164IPR007087Zinc finger, C2H2
SMARTSM003550.0994163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0114168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576674.87E-9122149No hitNo description
PfamPF139121.6E-8127149IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078127154IPR007087Zinc finger, C2H2
SMARTSM003550.67127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
XLATGFGSLK PSCLSEKKTK FDYSNSGSEM LENSPKKNGC YKCRTCNKIF YSHQALGGHQ  60
TIHRTPKNCS TLQIYSRQTV TQFEDFPGIE AIGNSTKTDF NEVSLDLVLE VDNNRVSTMT  120
SFEIKEHKCP ICFKIFGSGQ ALGGHKRAHI VKDTESGPEP INILKHHSIC GVSDVLDGVP  180
MTPGNEANTE VDLKSWWLKN GQKHELLVGL IPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879805.16e-54uncharacterized protein LOC107415907
TrEMBLA0A2P5ED781e-84A0A2P5ED78_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010089610.14e-52(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-18C2H2-like zinc finger protein