PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06517.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 518aa MW: 57159.4 Da PI: 7.2774

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06517.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.4e-09	330	377	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PK06517.1 330 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 377 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-17	324	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.33E-11	324	381	No hit	No description
PROSITE profile	PS50888	15.663	326	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-17	326	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-6	330	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	332	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MESFKYCMEI QSNNNNNNNN ELNSSSSEQI SVSDCLFKPN WEQQSLDQND PFESALSSIV 60 SSPVAPSNPN LNGGGDGIMI RELIGRLGNI CNSGEISPQS YMCSNNNSRN NSCYATPLNS 120 PPKLNLSSSV DPNPIRPNFH IPNPPSLAPF SGDPGFAARA AKFSCFGNNS NNFGELPFRS 180 VPRIDPIKPP SKASPLTNQP HQGSSRSSTP ENGDSREGSS VSDQIPTGKA TEIIEPNNNN 240 GNKKRKAISR GKSKEIQVKD SKVVEAIEND EQHNVKRSKK DNNNDNEGVV KGSKDLNQKQ 300 TKDNNNNSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT 360 GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA LLSKEIFQSR GSLPHGLYPL 420 DSSTTAFPFG YNHQQIMPPQ SSSLEAQFSI NPLNGSIHRA STNMQIPSGF AEHAQQQQPQ 480 TSTFFEDDLQ SVVQMGFGQI EQHSLQGSLT QAQMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MESFKYCMEI QSNNNNNNNN ELNSSSSEQI SVSDCLFKPN WEQQSLDQND PFESALSSIV  60
SSPVAPSNPN LNGGGDGIMI RELIGRLGNI CNSGEISPQS YMCSNNNSRN NSCYATPLNS  120
PPKLNLSSSV DPNPIRPNFH IPNPPSLAPF SGDPGFAARA AKFSCFGNNS NNFGELPFRS  180
VPRIDPIKPP SKASPLTNQP HQGSSRSSTP ENGDSREGSS VSDQIPTGKA TEIIEPNNNN  240
GNKKRKAISR GKSKEIQVKD SKVVEAIEND EQHNVKRSKK DNNNDNEGVV KGSKDLNQKQ  300
TKDNNNNSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT  360
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA LLSKEIFQSR GSLPHGLYPL  420
DSSTTAFPFG YNHQQIMPPQ SSSLEAQFSI NPLNGSIHRA STNMQIPSGF AEHAQQQQPQ  480
TSTFFEDDLQ SVVQMGFGQI EQHSLQGSLT QAQMKIEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019748.1	0.0	transcription factor bHLH62
TrEMBL	A0A2P5FCM5	0.0	A0A2P5FCM5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010093880.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-78	bHLH family protein