PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06396.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 73aa MW: 8787.87 Da PI: 9.186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.1e-11 | 21 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+eEd+ l+ v++ G +W Ia+ + ++Rt+ qc r+q PK06396.3 21 RNPWTAEEDKYLLLFVQEKGISNWIDIAASLRTNRTPFQCLARYQR 66 79******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-16 | 9 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 11 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.453 | 16 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-7 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-9 | 21 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-7 | 23 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
XMLQQPRLYR WLNFEDPLIN RNPWTAEEDK YLLLFVQEKG ISNWIDIAAS LRTNRTPFQC 60 LARYQRSLNV SIL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024929374.1 | 3e-31 | uncharacterized protein LOC107418690 isoform X1 | ||||
Refseq | XP_024929375.1 | 3e-31 | uncharacterized protein LOC107418690 isoform X2 | ||||
TrEMBL | A0A2P5AHC9 | 5e-33 | A0A2P5AHC9_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010097590.1 | 9e-30 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 9e-27 | myb domain protein 4r1 |