PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06396.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB

Protein Properties

Length: 511aa MW: 58767.8 Da PI: 9.4266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06396.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.4e-09	69	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+eEd+ l+ v++ G +W Ia+ + ++Rt+ qc r+q PK06396.1 69 RNPWTAEEDKYLLLFVQEKGISNWIDIAASLRTNRTPFQCLARYQR 114 79******************************************96 PP
2	Myb_DNA-binding	31.2	5.1e-10	123	166	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+++d +l av+ +G +W ++a+ + g t+ qc +rw k PK06396.1 123 RDWTKDDDAKLRSAVEIFGESDWQSVASVLE-GWTGTQCSNRWKK 166 57***************************.*********98 PP
3	Myb_DNA-binding	41.8	2.5e-13	176	219	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++lv a ++G+++Wk+ a ++ gRt+ qc++r+ + PK06396.1 176 GRWTADEDKRLVVAQLLFGPRNWKKTALFVP-GRTEVQCRERFVN 219 8****************************.********976 PP
4	Myb_DNA-binding	49.6	9.2e-16	229	272	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l a++++G W+++a+ ++ +Rt+++c+ rw k+l PK06396.1 229 KWTAEEDAKLRAAIAEYGYC-WAKVAAAVP-RRTDNMCRRRWKKLL 272 8***************99.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.983	38	63	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.6E-8	38	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.74E-17	45	112	IPR009057	Homeodomain-like
PROSITE profile	PS50090	9.942	64	116	IPR017877	Myb-like domain
SMART	SM00717	2.1E-7	68	118	IPR001005	SANT/Myb domain
CDD	cd00167	1.47E-5	71	116	No hit	No description
Pfam	PF13921	4.1E-8	72	120	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-12	77	128	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.73E-17	99	172	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.379	117	172	IPR017930	Myb domain
SMART	SM00717	1.3E-11	121	170	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-9	123	166	IPR001005	SANT/Myb domain
CDD	cd00167	4.38E-9	125	168	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-13	129	171	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-10	174	223	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.46E-23	174	268	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.953	174	221	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-14	176	225	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-11	176	219	IPR001005	SANT/Myb domain
CDD	cd00167	7.97E-9	177	221	No hit	No description
PROSITE profile	PS51294	24.557	222	276	IPR017930	Myb domain
SMART	SM00717	1.3E-13	226	274	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-18	226	272	IPR009057	Homeodomain-like
CDD	cd00167	1.47E-11	229	272	No hit	No description
Pfam	PF00249	8.4E-15	229	272	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
XGNGEYHDVS NDLDNILASI KNLDITSENI RAFLPKVNWE YLASMHLVGR SGAECEARWL 60 NFEDPLINRN PWTAEEDKYL LLFVQEKGIS NWIDIAASLR TNRTPFQCLA RYQRSLNVSI 120 LKRDWTKDDD AKLRSAVEIF GESDWQSVAS VLEGWTGTQC SNRWKKSLHP TREKVGRWTA 180 DEDKRLVVAQ LLFGPRNWKK TALFVPGRTE VQCRERFVNS LDPSLNWDKW TAEEDAKLRA 240 AIAEYGYCWA KVAAAVPRRT DNMCRRRWKK LLPDEVPLLQ AARRIQKAAF IGNFVDRESE 300 RPALCPGDFG PLRLMANSEN TNQTNKQAGK LREVKKRNVK KSIENSQTDQ KEVLGISNVS 360 NHGEAETQGT QKSKPEAKKR KRCVKQQSKA TDLTEPNEER ECLLLQPEKL NPTNDGDWNE 420 PLGQADRFDP NEAITRQGSR KSNPETKKRR RSYKQHSKMT DLTEPNEELL QPEKLNPTSE 480 GDWTEPFDAN EAITRRNSQK SKPETKKRKE S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

XGNGEYHDVS NDLDNILASI KNLDITSENI RAFLPKVNWE YLASMHLVGR SGAECEARWL  60
NFEDPLINRN PWTAEEDKYL LLFVQEKGIS NWIDIAASLR TNRTPFQCLA RYQRSLNVSI  120
LKRDWTKDDD AKLRSAVEIF GESDWQSVAS VLEGWTGTQC SNRWKKSLHP TREKVGRWTA  180
DEDKRLVVAQ LLFGPRNWKK TALFVPGRTE VQCRERFVNS LDPSLNWDKW TAEEDAKLRA  240
AIAEYGYCWA KVAAAVPRRT DNMCRRRWKK LLPDEVPLLQ AARRIQKAAF IGNFVDRESE  300
RPALCPGDFG PLRLMANSEN TNQTNKQAGK LREVKKRNVK KSIENSQTDQ KEVLGISNVS  360
NHGEAETQGT QKSKPEAKKR KRCVKQQSKA TDLTEPNEER ECLLLQPEKL NPTNDGDWNE  420
PLGQADRFDP NEAITRQGSR KSNPETKKRR RSYKQHSKMT DLTEPNEELL QPEKLNPTSE  480
GDWTEPFDAN EAITRRNSQK SKPETKKRKE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	5e-27	38	276	4	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-27	38	276	4	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022157.1	0.0	uncharacterized protein LOC21400403 isoform X2
TrEMBL	A0A2P5AHC9	0.0	A0A2P5AHC9_TREOI; Octamer-binding transcription factor
STRING	XP_010097590.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7441	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-131	myb domain protein 4r1