PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06347.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 444aa MW: 48565.9 Da PI: 10.0438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06347.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PK06347.1 10 FVCEICNKGFQRDQNLQLHRRGH 32 89*******************88 PP
2	zf-C2H2	12.3	0.00051	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PK06347.1 87 WKCDKCSKKYAVQSDWKAHSKTC 109 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-7	9	32	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	9	32	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.9E-5	10	32	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	10	32	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	10	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	52	82	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-4	75	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.28E-7	82	107	No hit	No description
SMART	SM00355	150	87	107	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
XKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTNKDQLKKK VYICPEKSCV 60 HHDPGRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 120 LFSRKDSFIT HRAFCDALAE ESARLTSVVS SNLSFGNRNN NVDDHTNAIT TSSPSSSTTT 180 MVNMDHILHG LGIMSRTTST SHGFQLQQDH FNHHLSKSRL SHWLNQANNS SHNSNNINNN 240 DNNPMDYVYN RSSSVQELVI GSTTSSTTLF GSCSSSMSSL VGLKEEANRV LNNSSSLSSS 300 KHVIAPMSAT ALLQKAAQMG STRSSSNASF STTNITTTTS SSSPGLMMIM NPSSSSATNS 360 HVNVATTMAH HYDHHGYLDG SNLMRSLGSN ISLSSSNIKG IENGGLTRDF LGSGSGVVMA 420 QRKLLSHNSC GSSAMGLSQF SGNH

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

XKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTNKDQLKKK VYICPEKSCV  60
HHDPGRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  120
LFSRKDSFIT HRAFCDALAE ESARLTSVVS SNLSFGNRNN NVDDHTNAIT TSSPSSSTTT  180
MVNMDHILHG LGIMSRTTST SHGFQLQQDH FNHHLSKSRL SHWLNQANNS SHNSNNINNN  240
DNNPMDYVYN RSSSVQELVI GSTTSSTTLF GSCSSSMSSL VGLKEEANRV LNNSSSLSSS  300
KHVIAPMSAT ALLQKAAQMG STRSSSNASF STTNITTTTS SSSPGLMMIM NPSSSSATNS  360
HVNVATTMAH HYDHHGYLDG SNLMRSLGSN ISLSSSNIKG IENGGLTRDF LGSGSGVVMA  420
QRKLLSHNSC GSSAMGLSQF SGNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-38	83	152	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-38	83	152	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027366218.1	1e-129	zinc finger protein JACKDAW-like
Swissprot	Q9LVQ7	1e-100	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2P5FV12	1e-166	A0A2P5FV12_TREOI; TFIIH C1-like domain containing protein
STRING	cassava4.1_032876m	1e-125	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-87	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]