PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06103.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 21926.7 Da PI: 9.982 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4e-09 | 25 | 53 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +++WT+eE+ l+ +v ++G g W+tI PK06103.2 25 KQKWTAEEEAALKAGVIKHGAGKWRTILT 53 79*************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-9 | 22 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-6 | 25 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 25 | 70 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.09E-12 | 26 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
DSGSAEFDCP RTRRLFXLLL MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI 60 LHLRSNVDLK VSICKFLAVT VSKFQKSSVW MDDFMFLGPL TLFQLYYAFC IFQDHILFGS 120 DXDKWRNINV TAIWGSRQKA KLALKKNLPT PKLDNNPLAL VTVVQNVEEV VDAKPLAIAS 180 GTMRNTNSKE PNARX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102753.1 | 1e-59 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805529.1 | 2e-59 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805530.1 | 2e-59 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805531.1 | 2e-59 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805532.1 | 2e-59 | telomere repeat-binding factor 2 | ||||
Refseq | XP_024025472.1 | 1e-59 | telomere repeat-binding factor 2 | ||||
TrEMBL | A0A2P5D0H9 | 2e-60 | A0A2P5D0H9_PARAD; Telomeric repeat-binding factor | ||||
STRING | XP_008237807.1 | 9e-59 | (Prunus mume) | ||||
STRING | EMJ06834 | 9e-59 | (Prunus persica) | ||||
STRING | XP_010102753.1 | 5e-59 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 2e-32 | MYB_related family protein |