PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 158aa MW: 18273.4 Da PI: 10.3043 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 21 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H PK05993.1 21 FYCDLCNKQYKLAMEFEAHLSSydH 45 78*****************987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.67E-6 | 19 | 51 | No hit | No description |
Pfam | PF12171 | 6.5E-6 | 21 | 48 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
XVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL SSYDHNHRKR FKEMREMLGT 60 SSRDDRLKRE QQRQEREMAK FAQMAEADAR KQQQQLQQQQ EESRVAAVAS ELKNASVVAD 120 QDQRKTLKFG FSSKGGTSKM SFGSVARKPK SAVASVFG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU947514 | 1e-77 | KU947514.1 Toxicodendron vernicifluum microsatellite c15902 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022159589.1 | 1e-83 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A2P5DRA0 | 2e-84 | A0A2P5DRA0_TREOI; G patch domain-containing protein | ||||
STRING | XP_004163770.1 | 2e-77 | (Cucumis sativus) | ||||
STRING | XP_008388422.1 | 3e-77 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |