PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 352aa MW: 38935 Da PI: 8.7575 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108 | 5.3e-34 | 55 | 112 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v Y+eClkNhAa++Ggha+DGCgEfmp +++e +++++lkCaACgCHRnFHRr++ e PK05969.1 55 VVSYRECLKNHAANIGGHALDGCGEFMPCPTAEpSDPTSLKCAACGCHRNFHRRDQPE 112 689******************************9********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-22 | 56 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.4E-28 | 56 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.399 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-29 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-28 | 218 | 289 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.08E-17 | 220 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.6E-26 | 227 | 283 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDLSSNPTKT TQDKDTETPP LPQPTRPLSF TNGSLKQQHR HQNHHALTHA PLPTVVSYRE 60 CLKNHAANIG GHALDGCGEF MPCPTAEPSD PTSLKCAACG CHRNFHRRDQ PEEPTSKHFL 120 RSFHNGHPFQ LQPLRLSSQP RQGRSSSPSL SPSPSSSTGP TPSPQSPPPV SHLPPNSYFA 180 SPPQMLLALS TGFSTGPPSD NLPHAHKSFN PTVGVKSSEA TNYSNGKKRF RTKFNQEQKE 240 KMCLFAEKLG WKMQRSEERL IEEFCKEIGV RRGVLKVWMH NNKHTVGKKD RGLSHSNNLG 300 DEASNGDNTN NEGRVLSYDS NQDNEIVDDQ NQNGEDRRAN FNFFANGSSA SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-21 | 228 | 285 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895093.1 | 1e-100 | zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2P5AA85 | 1e-143 | A0A2P5AA85_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_008221618.1 | 1e-89 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-55 | zinc finger homeodomain 1 |