PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05923.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 369aa MW: 40657.6 Da PI: 6.0139

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05923.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.4e-08	211	258	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq PK05923.1 211 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 258 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-15	205	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.45E-9	205	262	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-14	207	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.526	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-6	211	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-8	213	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MENLSALTLT ESGSIGVGLQ NGESGFDSVQ FGEEIQTLIT VTPDNASSFT ALLELPANQA 60 MELLHHVPES NGNKIAGDPL HNKPFPQQLP FGSNLTFLSD PALIERASKF SVFAGGQHSP 120 ETTSSVPSNS SANLDKVKNE PTETDSNPNS SQPLVSDPMV EEKSQKPLMK RKEREKKAKV 180 SSKKSKNEIR EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI 240 SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRIDFNLD NILATANGSV MEGSLPNMGS 300 PLMWPEFPLN GNRQQYQQQW HLDAIGLQQP LWGRQEDSHT FVTPENSLLT YDSSANSASL 360 HSSQLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MENLSALTLT ESGSIGVGLQ NGESGFDSVQ FGEEIQTLIT VTPDNASSFT ALLELPANQA  60
MELLHHVPES NGNKIAGDPL HNKPFPQQLP FGSNLTFLSD PALIERASKF SVFAGGQHSP  120
ETTSSVPSNS SANLDKVKNE PTETDSNPNS SQPLVSDPMV EEKSQKPLMK RKEREKKAKV  180
SSKKSKNEIR EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI  240
SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRIDFNLD NILATANGSV MEGSLPNMGS  300
PLMWPEFPLN GNRQQYQQQW HLDAIGLQQP LWGRQEDSHT FVTPENSLLT YDSSANSASL  360
HSSQLKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031128.1	0.0	transcription factor bHLH48
Swissprot	Q3EAI1	8e-98	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2P5CAU9	0.0	A0A2P5CAU9_PARAD; Basic helix-loop-helix transcription factor
STRING	XP_010111436.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-102	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]