PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05843.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28805.3 Da PI: 5.1007 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 10 | 44 | 2 | 37 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++W t E++ll++av+++G+++W++Ia ++ +Rt+ PK05843.2 10 QPWCTLEELLLACAVNRHGTKNWDSIAMELS-NRTE 44 689999*************************.9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 7 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-6 | 8 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 10 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.33E-6 | 10 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.11E-6 | 11 | 60 | No hit | No description |
PROSITE profile | PS50090 | 6.458 | 11 | 60 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAKEHETSVQ PWCTLEELLL ACAVNRHGTK NWDSIAMELS NRTESPWTPD TCKHRFDELK 60 RRFTSRNDDE STSFLLIVDQ LKKIRLEELR REVRRHDVSI VSLELKVKRL EEEREKSLKE 120 ENEDKINLEE NERRLNSPEN NLAVKSNSDS CDRENRSSDE SNSTSRRNGA VKSETEPEPE 180 RINDSDPPRP ESEPGKVVNG DENETMAARG EDNTKQSSDV QSSMSLSKSK RSRKRSGAEA 240 GAGAGSGAAA VSSSGX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024020531.1 | 2e-73 | uncharacterized protein LOC21401380 | ||||
TrEMBL | W9QD95 | 6e-71 | W9QD95_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087384.1 | 1e-71 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1870 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 2e-14 | DNA-binding bromodomain-containing protein |