PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05767.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 405aa    MW: 44339.2 Da    PI: 8.9511
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05767.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-1679138155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  PK05767.1  79 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 138
                78*******************655454478446*************************98 PP
2AP247.15.9e-15183232355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PK05767.1 183 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 232
                9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1279138IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-1779148IPR016177DNA-binding domain
CDDcd000181.91E-2079148No hitNo description
SMARTSM003804.6E-2980152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-1680147IPR001471AP2/ERF domain
PROSITE profilePS5103218.95380146IPR001471AP2/ERF domain
PRINTSPR003677.2E-78192IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-18181242IPR016177DNA-binding domain
CDDcd000182.87E-24181242No hitNo description
SMARTSM003802.1E-34182246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18182240IPR001471AP2/ERF domain
PROSITE profilePS5103219.137182240IPR001471AP2/ERF domain
PfamPF008471.1E-9183232IPR001471AP2/ERF domain
PRINTSPR003677.2E-7222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
XSEKSASEAD GGGGGGGNNF QTLSLTMSPS SQNGVGEISS LQVATTAAVE GGRKRSGGKS  60
LGKEPVPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD  120
KEEKAAKAYD LAALKYWGPT THINFPLSTY EKELEEMTNM TRQEFVANLR RKSSGFSRGA  180
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGTSAVTNFD  240
ISRYDVKRIC SSSKLIASDL AKRNSPRDVS VAVATLDSDF NSRVPSTSSP QPLLAITNSC  300
EASDELVDMM WSTNTAPNMD DRHHQPQEIN SETNNSTSFA APLNGRNSPS GGEFGEGSGG  360
EFAHAYFMHG NSSSGNKYEQ NGNGGNIGLV QQHAPMFALW NHEXW
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865623.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X3
SwissprotQ1PFE11e-132AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2P5ETN80.0A0A2P5ETN8_TREOI; AP2/ERF transcription factor
STRINGXP_010107987.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]