PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05760.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 162aa    MW: 19034.7 Da    PI: 10.8411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05760.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll d+v ++G g W++++ + g++R++k+c++rw++yl
        PK05760.1 16 KGAWTREEDDLLRDCVDKYGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding52.41.2e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
        PK05760.1  69 RGEFTADEVDLILRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 114
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2331167IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-231366IPR009057Homeodomain-like
SuperFamilySSF466893.67E-2914110IPR009057Homeodomain-like
SMARTSM007171.2E-141565IPR001005SANT/Myb domain
PfamPF002491.4E-161663IPR001005SANT/Myb domain
CDDcd001671.49E-101863No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2467118IPR009057Homeodomain-like
SMARTSM007171.5E-1568116IPR001005SANT/Myb domain
PROSITE profilePS5129419.98668118IPR017930Myb domain
PfamPF002493.0E-1569114IPR001005SANT/Myb domain
CDDcd001673.44E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
TDQREGGSSG GRAVRKGAWT REEDDLLRDC VDKYGEGKWH LVPLRAGLNR CRKSCRLRWL  60
NYLKPDIKRG EFTADEVDLI LRLHKLLGNR WSLIAGRIPG RTANDVKNYW NTHLGKKVMM  120
SYDKLNQKHY LRNKDDHHKF IPKSNIIKPR PRTFRNQLPL TX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026656.11e-70transcription factor MYB113-like
SwissprotQ9FNV91e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3G8FWT93e-69A0A3G8FWT9_9SOLA; MYB transcription factor AN2
TrEMBLA0A3G8FWV93e-69A0A3G8FWV9_9SOLA; MYB transcription factor AN2
TrEMBLA0A3G8FWW62e-69A0A3G8FWW6_PETIN; MYB transcription factor AN2
TrEMBLA0A3G8FWX53e-69A0A3G8FWX5_9SOLA; MYB transcription factor AN2
TrEMBLA0A3G8FWX93e-69A0A3G8FWX9_9SOLA; MYB transcription factor AN2
TrEMBLA4GRU83e-69A4GRU8_PETIN; Anthocyanin 2
STRINGLus100285131e-66(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-66myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]