PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 81aa MW: 8514.01 Da PI: 4.578 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 32.8 | 1.6e-10 | 59 | 80 | 3 | 24 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDG 24 k rY+eC+kNhA+ +Gg+a+DG PK05484.1 59 KPRYRECQKNHAVGMGGYALDG 80 679******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 0.001 | 61 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.4E-7 | 61 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 14.327 | 62 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MEFEDHEEHD EEMEMAASYD SLGNSGSGRV KMPSSGGVAT AAAGAGEGVM SQSASQPRKP 60 RYRECQKNHA VGMGGYALDG X |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876724.1 | 7e-23 | zinc-finger homeodomain protein 2-like isoform X1 | ||||
TrEMBL | A0A2P5ADF1 | 2e-30 | A0A2P5ADF1_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_008385680.1 | 3e-19 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31200 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 3e-06 | homeobox protein 24 |