PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05432.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 511aa    MW: 55688.1 Da    PI: 8.3024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05432.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33250306259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDg+nWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g H he
  PK05432.1 250 DDGFNWRKYGQKQVKGSEFPRSYYKCTYSNCPVKKKVERSQ-DGQITEIIYKGMHSHE 306
                7****************************************.***************8 PP
2WRKY107.37.8e-34434492159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  PK05432.1 434 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 492
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-29242308IPR003657WRKY domain
SuperFamilySSF1182903.92E-26245308IPR003657WRKY domain
SMARTSM007748.8E-36249307IPR003657WRKY domain
PROSITE profilePS5081123.009250308IPR003657WRKY domain
PfamPF031065.5E-26250305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37419494IPR003657WRKY domain
SuperFamilySSF1182901.27E-29426494IPR003657WRKY domain
PROSITE profilePS5081139.192429494IPR003657WRKY domain
SMARTSM007749.6E-40434493IPR003657WRKY domain
PfamPF031061.8E-26435492IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAKNQDPERL SFSASTVPPP ARPSLTLPPR PSMETFFSEG AGASPGPLTL VSRFFDNTNP  60
DSDYRSFTQL LAGAIASPLA RPSFNFENSF DNYGKGGDGR DKDSSGFKQS RPMNLAVGAN  120
SPLFMVPSGL SPSGLLNSPG FFSPQSPFGM SHQQALAQVT AQAAFAAQSQ FPMQLEYKPS  180
IVSTAASTGT HTQSIEPSYI KSEVSQQQQQ QQAVPSTSEQ MESSGPSHSD KKYHAPPPPP  240
ATAVNDKPGD DGFNWRKYGQ KQVKGSEFPR SYYKCTYSNC PVKKKVERSQ DGQITEIIYK  300
GMHSHEMPQS SNKRVKDSSS SDANGHGNVH VKSEMNSQNR NGGGNLQRSN ETGQSQLGYE  360
RDRESAQGVL VQVPGSSDSE EVVDADVRED EGNADEPNAK RRNIEVGTSE VSLSHKTVTE  420
PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TSAGCNVRKH VERASTDPKA  480
VITTYEGKHN HDVPAARNSS HSTANNNNPH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-41250495878Probable WRKY transcription factor 4
2lex_A9e-41250495878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297321e-107KP229732.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY03) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089564.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-138WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLW9QTC50.0W9QTC5_9ROSA; Putative WRKY transcription factor 3
STRINGXP_010089564.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-106WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]