PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05421.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LSD
Protein Properties Length: 149aa    MW: 15475 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05421.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.3e-133155125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YP GA+sV+Ca+C++V
  PK05421.1 31 CSGCRNLLLYPVGATSVCCAVCNAV 55
               ************************9 PP
2zf-LSD146.75e-157094125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  PK05421.1 70 CGGCHTLLMYIRGATSVQCSCCHTV 94
               ************************9 PP
3zf-LSD141.81.7e-13108132125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  PK05421.1 108 CGNCRMLLMYQYGARSVKCAVCNFV 132
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.106.0E-425129No hitNo description
TIGRFAMsTIGR010531.0E-122858IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-103155IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.63E-531129IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.1E-156796IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127094IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.2E-12105135IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12108132IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPVPLAPYPS PPAAAPYTTP PSNGAQSQLV CSGCRNLLLY PVGATSVCCA VCNAVTAVPP  60
PGTEMAQLVC GGCHTLLMYI RGATSVQCSC CHTVNLALEA NQVAHVNCGN CRMLLMYQYG  120
ARSVKCAVCN FVTSVGVPTT TTTEQKFNG
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904158e-82BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963735.13e-92protein LOL1
RefseqXP_025652015.13e-92protein LOL1-like isoform X2
RefseqXP_025698482.13e-92protein LOL1-like isoform X2
SwissprotQ93ZB18e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A2P5C7N24e-90A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRINGcassava4.1_018557m4e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]