PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05257.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 370aa    MW: 42689.2 Da    PI: 6.736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05257.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015201220120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                + C +C+k+F+r  n++ H+
  PK05257.1 201 FACFICHKTFNRYNNMQMHM 220
                78*****************9 PP
2zf-C2H211.90.00068285309123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C    Cgk+F  k + ++H +++
  PK05257.1 285 FRCRkySCGKTFAVKGDWRTHEKNC 309
                899999***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-4201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.93201228IPR007087Zinc finger, C2H2
SMARTSM003551.8201223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SMARTSM00355190248280IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.31E-5271307No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4272307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035563285307IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
IEWLKPISSS SSSSYSCSPP NSSSSTSSYS SSITTTNRDY YYVNNNNSRI SSNSSTNSTA  60
LQCLPLLNRL DNDHNHEIKP NLKVEEDTFE KVTLHIGLPN TTVAADDYDH CDSTEFSDDH  120
HRHDDDDEKH IKVIDHFKEE KEEEEEKDDD HDRDHDKNNE EEEVVVNMKK HINKSFECSF  180
NMESRFWIPT PAQILVGPMQ FACFICHKTF NRYNNMQMHM WGHGSEYRKG PDSLKGTQPA  240
AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHYKRKH GLKPFRCRKY SCGKTFAVKG  300
DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRSFGNGHSP HPSLEGFDHD EKECVTAGSE  360
DEELIMTTHA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089843.11e-142zinc finger protein WIP3
SwissprotQ9SGD11e-118ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2P5DU671e-149A0A2P5DU67_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010089843.11e-142(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-108WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]