PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04952.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 346aa    MW: 39617.2 Da    PI: 6.4705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04952.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.72.1e-3273178199
                EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                f+k ltpsdv+k++rlv+pk++ae++         gg+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++ +++ +
  PK04952.1  73 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdsvGGE--KGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHCTDNDR 170
                99****************************99987666..5668************************************************99999999 PP

                .EEEEE-S CS
         B3  92 lvvkvfrk 99 
                l+++++r+
  PK04952.1 171 LFIGWRRR 178
                ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-4066185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3170178IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-2871163No hitNo description
PROSITE profilePS5086314.46673179IPR003340B3 DNA binding domain
PfamPF023625.9E-2973179IPR003340B3 DNA binding domain
SMARTSM010193.3E-2573179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDTSPHNIRE FYHQTTPFTE IMSRTSNSFN LNQYDDNEHN DVVLDQRYRH PNQNDNNNNE  60
EEEEIIIMKE PMFEKPLTPS DVGKLNRLVI PKQHAEKYFP LGGGDSVGGE KGLLLSFEDE  120
SGKFWRFRYS YWNSSQSYVL TKGWSRYVKE KRLDAGDVVL FERHCTDNDR LFIGWRRRQA  180
AAQDSAAALA AAHASNCGGG GDGYINNINN NNNNNNNNTG WTRMFYSAHP YPTHPHYQHH  240
HQLQHHPVMP YHPDSIHAGI SSNVPNQTTS SPVHGNSKIL RLFGVNLECH EQQSDENELE  300
PSTPDGSSLS SQGPPAHHQF YPPAHYSDHM DFTFSRDVKP MRNDRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49691784113B3 domain-containing transcription factor NGA1
5os9_B2e-49691784113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.21e-108PREDICTED: B3 domain-containing protein At2g36080
TrEMBLA0A2P5EBG71e-137A0A2P5EBG7_TREOI; B3 DNA binding domain containing protein
STRINGVIT_08s0007g02810.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-58B3 family protein