PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04914.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 536aa    MW: 58452.2 Da    PI: 7.1363
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04914.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-17155241186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +L++a++++ +++ rg l++ +Weev+  +  r +  ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  PK04914.1 155 EWSDAAIACLLDAYTDKFTQVDRGHLRGRDWEEVATIVseRCERQTKSVEQCKNKVDNLKKRYKLERQRMNNG-GISGSHWPWFKKME 241
                5*************************************666667789**********************9999.455568*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-21153243No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-72289529IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.865295530IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.84E-58296529IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.02E-121298530No hitNo description
PfamPF006961.8E-23299509IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MASCDDDFSP LLGDDPNPNN TTTAPTNPHH LSHLHQTYST APVHRFSSAR PTPNQTILNA  60
RSPDKVGAEE EQDDGEDYGE AAAFCSNPFE NDSDQNGGSV VVSEKRKERH HHHHRDEQLS  120
DGGGSGGPYS YKKAKTTSAS GTSGGGGEYR KDREEWSDAA IACLLDAYTD KFTQVDRGHL  180
RGRDWEEVAT IVSERCERQT KSVEQCKNKV DNLKKRYKLE RQRMNNGGIS GSHWPWFKKM  240
EQIVGNNLPI KVASDDDKGA SSSGNTPRQS KRYALTTGSS AGQIVHVKPK ATMNPRWRRV  300
VLKISGAALA GAAPNNIDPK VVMLIAREVA MAARVGVQVA IVVGGSNFFC GDTWVNTTGL  360
DRTTAYQIGM MATVMNSVLL QSAIEKMGVQ TRVQTAVSMH EVAEPYNRQR AIRHLEKGRV  420
VIFAGIGAST GNPLFSTDTA AAFRSLEIHA EAVLKGTNVD GVYDCTSQDN NFTFEHITFR  480
ELVARGATSM DAMALTYCED NRIPVVVFNL LEPGNISKAL CGEQVGTLID HTGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-632975299239Uridylate kinase
3ek5_B4e-632975299239Uridylate kinase
3ek5_C4e-632975299239Uridylate kinase
3ek5_D4e-632975299239Uridylate kinase
3ek5_E4e-632975299239Uridylate kinase
3ek5_F4e-632975299239Uridylate kinase
3ek6_A4e-632975299239Uridylate kinase
3ek6_B4e-632975299239Uridylate kinase
3ek6_C4e-632975299239Uridylate kinase
3ek6_D4e-632975299239Uridylate kinase
3ek6_E4e-632975299239Uridylate kinase
3ek6_F4e-632975299239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922250.10.0uncharacterized protein LOC107432001 isoform X2
TrEMBLA0A2P5C5290.0A0A2P5C529_PARAD; Aspartate/glutamate/uridylate kinase
STRINGXP_010112506.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein