PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04762.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 715aa    MW: 80290 Da    PI: 6.7808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04762.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24139240199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+ltpsd++++g +++pk+ a+ +       ++++   ++l+ +d++g +W +++iyr++++r++lt+GW+ Fv+a++L +gD+++F   + +++ l+
  PK04762.1 139 FSKILTPSDTSTHGGFSVPKRQADGCfplldmsQQPP--VQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVSAKKLVAGDSCIFL--RGENGDLR 234
                88*********************999*****744444..458************************************************..3488899* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  PK04762.1 235 VGIRRA 240
                ***996 PP
2Auxin_resp84.91.6e-28268348383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 h++s     +v+Y+P+++++eF++++++++k++++ + +G++f   +e+e++se+r++Gt++gv+d d +rWp+S+Wr+Lk
   PK04762.1 268 HSFSALAFIHVYYRPWTCPAEFIIPYDEYMKSVENDYLPGTKFGYTLEGEECSEKRYTGTIIGVEDQDGIRWPGSHWRCLK 348
                 6677777789*********************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-37128268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-40133249IPR015300DNA-binding pseudobarrel domain
CDDcd100178.07E-24137239No hitNo description
PfamPF023622.3E-22139240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929139241IPR003340B3 DNA binding domain
SMARTSM010191.5E-23139241IPR003340B3 DNA binding domain
PfamPF065075.6E-25268348IPR010525Auxin response factor
PfamPF023091.8E-9611699IPR033389AUX/IAA domain
SuperFamilySSF542772.94E-10614692No hitNo description
PROSITE profilePS5174518.598615708IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDHSGVEGTN GLQEQSTSCF EVPTENEDVK DPLSNGLWKA CAGRQVRVPL RGEMVYYFPQ  60
GHIEQVQAYA SEDGNVEMPI YNLPSKILCK VSNIELKAEV LSDEVFAQIT LLPLTDKLEL  120
SSNDVDITAL PKKTKVFSFS KILTPSDTST HGGFSVPKRQ ADGCFPLLDM SQQPPVQELV  180
AKDLHGFEWH FRHIYRGQPK RHLLTSGWST FVSAKKLVAG DSCIFLRGEN GDLRVGIRRA  240
MKKTLNHAST SVISSQSMQH GVLATAFHSF SALAFIHVYY RPWTCPAEFI IPYDEYMKSV  300
ENDYLPGTKF GYTLEGEECS EKRYTGTIIG VEDQDGIRWP GSHWRCLKVQ WDAQSSISVL  360
PERLSPWNIK PVDSTDKTDI FVRPPPKRRR ELDLLSSESH SLATQAKHTP QRLKEVLQGQ  420
EISVRHGQEP SARIQSMLPK FVMPPNPELK QGQLKFEKQL QAPFYQYPRE QLAFPGEKTT  480
KTSLTNNQWW SMCAPYRGSD SAAFTKSFSV SNGNSGHSGS QEYMTLGKKS GDGAPCYPND  540
SNKYMLFGVN LFNSHQELPS PQVTTSCELL SPFSFPPTSQ CSSVSEPIQV SDTSKSISDF  600
FPEKQCNKCC SIRYRSYIKV LKHGTALGRT TDLSKFDGYA ELIAELDQMF GFNGSLIDGS  660
SEWKVTYMDI EGDLMLLGDY DWQVFRSAAR KIFICPMEEI NKMNPSSLKS SLLVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1282937815361Auxin response factor 1
4ldw_A1e-1282937815361Auxin response factor 1
4ldw_B1e-1282937815361Auxin response factor 1
4ldx_A1e-1282937815361Auxin response factor 1
4ldx_B1e-1282937815361Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032050.10.0auxin response factor 2A
TrEMBLA0A2P5FFW60.0A0A2P5FFW6_TREOI; Auxin response factor
STRINGXP_010112723.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-136auxin response factor 2