PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04489.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 36760 Da PI: 6.0521 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.5 | 1.4e-08 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++l+C+ + +lC +C ++ H PK04489.1 4 KLCDSCKSATATLYCRADAAFLCVTCDSNVHAA 36 68***************************9955 PP | |||||||
2 | zf-B_box | 28.2 | 3.9e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ PK04489.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPI 91 689*****************************66899999*99997 PP | |||||||
3 | CCT | 69.9 | 6.4e-24 | 278 | 321 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PK04489.1 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.1E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.409 | 1 | 42 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.0E-6 | 4 | 35 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.05E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.993 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.11E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 2.8E-11 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 278 | 320 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.9E-18 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MASKLCDSCK SATATLYCRA DAAFLCVTCD SNVHAANKLA SLHARVWVCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP ITPLYESLNT AKSNGGGGGD GGAVNFLNDR 120 YFPEDAAEPN QTTAEVSTEE AEAASWLLPN PKAMESPDLN SGQYVFPDMV PYLDLDYGHL 180 DPKLEAQEQN SSGTDGVVPV HSNKSSQSQP PMANEQCYEI DFSGSNKHFL YNLSHSVSSS 240 SLDVGVVPDG PNGVEICENN KPMGSNGPQA AQFSSADREA RVLRYREKRK NRKFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TEVEIEAERY GVVPMF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222404.1 | 1e-157 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-126 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2P5DIR0 | 1e-177 | A0A2P5DIR0_PARAD; Zinc finger-domain containing protein | ||||
STRING | EMJ23603 | 1e-157 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-123 | CONSTANS-like 4 |