PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04276.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 338aa    MW: 37874.9 Da    PI: 4.7653
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04276.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.58.2e-0930103276
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                W+    l L++    +e + +++ +  ++W  +++++    + r+ +qC+ kw++l  +y +ik++e++   +s+
  PK04276.1  30 WSLMDSLILVNEIAAVEADCSKALSSYQKWVIIAENCTGLNVPRKLNQCRRKWDSLLLDYNNIKKWESNS-GDSV 103
                77777778888888999999999999*****************************************984.3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-744105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAQSHDDSSC RELQRISGSR RTRSQGAPDW SLMDSLILVN EIAAVEADCS KALSSYQKWV  60
IIAENCTGLN VPRKLNQCRR KWDSLLLDYN NIKKWESNSG DSVSFWSIGS DRRESLGLPG  120
DFHHDLFLAI ESLIMARENQ PDTDPEDGDD EAKDDTVDLV KELGADTDLY KQAKGSKRQR  180
RRSTSQENSA WKSLSEEVSI KSQAETKAPG FHVEDNPAMN SIEKTPVRSS SDLRPLDQTS  240
TKRKSQKGNV VENENHETAE TEDEKEQRFA QMLRENAEMI SSIVSENGMY GVGKAENGEV  300
GQTKSAEYVR RQGDKLIACL GDIVKSLDHL CVLVQECE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896191.13e-90trihelix transcription factor ASR3
TrEMBLA0A2P5G1E41e-112A0A2P5G1E4_TREOI; Myb-like domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-58sequence-specific DNA binding transcription factors