PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 338aa MW: 37874.9 Da PI: 4.7653 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.5 | 8.2e-09 | 30 | 103 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W+ l L++ +e + +++ + ++W +++++ + r+ +qC+ kw++l +y +ik++e++ +s+ PK04276.1 30 WSLMDSLILVNEIAAVEADCSKALSSYQKWVIIAENCTGLNVPRKLNQCRRKWDSLLLDYNNIKKWESNS-GDSV 103 77777778888888999999999999*****************************************984.3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-7 | 44 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAQSHDDSSC RELQRISGSR RTRSQGAPDW SLMDSLILVN EIAAVEADCS KALSSYQKWV 60 IIAENCTGLN VPRKLNQCRR KWDSLLLDYN NIKKWESNSG DSVSFWSIGS DRRESLGLPG 120 DFHHDLFLAI ESLIMARENQ PDTDPEDGDD EAKDDTVDLV KELGADTDLY KQAKGSKRQR 180 RRSTSQENSA WKSLSEEVSI KSQAETKAPG FHVEDNPAMN SIEKTPVRSS SDLRPLDQTS 240 TKRKSQKGNV VENENHETAE TEDEKEQRFA QMLRENAEMI SSIVSENGMY GVGKAENGEV 300 GQTKSAEYVR RQGDKLIACL GDIVKSLDHL CVLVQECE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896191.1 | 3e-90 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2P5G1E4 | 1e-112 | A0A2P5G1E4_TREOI; Myb-like domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6732 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 2e-58 | sequence-specific DNA binding transcription factors |