PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 221aa MW: 23878.6 Da PI: 6.5146 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.1 | 4.6e-36 | 49 | 128 | 2 | 80 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ++ PK04257.1 49 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpawnplitcqavT-----------TEN 128 79**************************************************************4444444333331...........222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-32 | 49 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEDYPPSSSQ KSVIPITPSR LGTRGGSGGG GGVGGEIVEV QGGHIVRSTG RKDRHSKVCT 60 AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKAAIDELD ELPAWNPLIT 120 CQAVTTENAQ TIVTTGDVRR LDSNSVTAAA DMVEVGGGGF LPPSLDSDSI ADTIKSFFPD 180 QPHQQLCSSV NQFYNNPPDL LSRTSSQNQD LRLSLQSFQD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-21 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-21 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018849844.1 | 8e-80 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 6e-76 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2I4H132 | 2e-78 | A0A2I4H132_JUGRE; transcription factor TCP4-like | ||||
STRING | POPTR_0001s38480.1 | 8e-79 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-68 | TCP family protein |