PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04210.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 359aa    MW: 39081.3 Da    PI: 6.8808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04210.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.5e-17270306135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cgt++  Tp++Rrgp+g+++LCnaCGl++  +g+
  PK04210.1 270 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWSNRGT 306
                ********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.985136171IPR010399Tify domain
SMARTSM009791.2E-12136171IPR010399Tify domain
PfamPF062002.5E-13139170IPR010399Tify domain
PfamPF062035.7E-15203245IPR010402CCT domain
PROSITE profilePS5101712.362203245IPR010402CCT domain
SMARTSM004018.4E-15264317IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12267315No hitNo description
Gene3DG3DSA:3.30.50.105.2E-16268311IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.84E-15269316No hitNo description
PROSITE profilePS5011410.594269320IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14270306IPR000679Zinc finger, GATA-type
PROSITE patternPS003440270297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
XSNQTWSYLI FLLLSAPDKN QVTLSFPHTN TISLLCFRLL FFLTTRIFSP CNASLEPPMY  60
GHAQSLTIPN QIAEDEDASG IGPGAESVDN NPHLRYEPHA LDESAGVVAG GGGVVEDVNH  120
DSVYGGGGGH ELVVHRNDGS SQLTLSFRGQ VYVFDAVTPD KVQAVLLLLG GCEISAGAQG  180
VGMQSQNQRA MVDIPVRCSQ SHRAASLNRF RQKRKERCFD KKVRYCVRQE VALRMQRNKG  240
QFTSKKSDGS YSWGNSQESG QEDNLLETSC THCGTSSKST PMMRRGPSGP RSLCNACGLF  300
WSNRGTLRDL SKKTQDHSST PVEQGEGEAS DSNCETTIRT HSNLVPFSNG DTSALIAEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099559.21e-163GATA transcription factor 25
SwissprotQ9LRH61e-86GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2P5EWB21e-173A0A2P5EWB2_TREOI; GATA transcription factor
STRINGXP_010099559.11e-158(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-89GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]