PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04189.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 321aa    MW: 34755.7 Da    PI: 5.5111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04189.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-13210246135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg  +  Tp +Rrgp g+++LCnaCGl+++ kg+
  PK04189.1 210 CQHCGINEkcTPAMRRGPGGPRSLCNACGLMWANKGT 246
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.28473108IPR010399Tify domain
SMARTSM009792.6E-773108IPR010399Tify domain
PfamPF062003.8E-1076107IPR010399Tify domain
PfamPF062036.5E-16141183IPR010402CCT domain
PROSITE profilePS5101713.215141183IPR010402CCT domain
SMARTSM004011.2E-10204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-10208255No hitNo description
Gene3DG3DSA:3.30.50.107.2E-13208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-12209252No hitNo description
PfamPF003201.7E-11210246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDTVNPQPLQ VRPYVAEGGG HIVQFAVLGE SNGVCFDVDV VGGGGGGRSD SMNGGVGDSP  60
RDFAMVACGN SGVPSRTSEL TIAFEGEVYV FPAVTPEKVQ AVLLLLGGCD VPSCAPSSEF  120
IVEQNSRGVS DLTRSSKVSR RIASLMRFRE KRKERCFEKK IRYTCRKEVA QRMHRKNGQF  180
ASSKESCKTD VGNWDSSDGT PCAESELRKC QHCGINEKCT PAMRRGPGGP RSLCNACGLM  240
WANKGTLRDL SKSGTGRAIT FDQNEMETTG DVKPLAVEAE NSYHEQDGQG SPDEIKPVSL  300
DSENPSLRLS DQEMQDLQDL X
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031736.11e-153GATA transcription factor 24
SwissprotQ8GXL76e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2P5FKM11e-170A0A2P5FKM1_TREOI; GATA transcription factor
STRINGXP_008237241.11e-122(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-58ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]