PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03929.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 355aa MW: 37787.2 Da PI: 9.5395

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03929.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk+s PK03929.1 48 PETALKCPRCQSSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTS 108 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-35	32	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
LPPPAQLIPS HHVGGGGSDS LSNGGTGTGS IRPGSMADRA RLAKIPQPET ALKCPRCQSS 60 NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKKTSKS SSRGSKSPAG 120 NNSGDQNKQT AAGSSSSTST GGGGLISPSA DPMSGHNNNN NNNTSSFLAS MQNLTRFGSG 180 NLGLNFTANN NNNNNDHHQI QAGGSDLGFQ IGSEVVDQWR LQQFPLMGGG HHDFESHPGN 240 NNLYPFQGSS GTSGMVEVGD NHDDHQMSHD HSNMMFRSRV SQLIPQVKVE DHRGNQLLVG 300 GGGLNLLRPN LGLSSSENNN YWGPSNGNTA SSTQWTDLST LNTTNINTST THPLL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

LPPPAQLIPS HHVGGGGSDS LSNGGTGTGS IRPGSMADRA RLAKIPQPET ALKCPRCQSS  60
NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKKTSKS SSRGSKSPAG  120
NNSGDQNKQT AAGSSSSTST GGGGLISPSA DPMSGHNNNN NNNTSSFLAS MQNLTRFGSG  180
NLGLNFTANN NNNNNDHHQI QAGGSDLGFQ IGSEVVDQWR LQQFPLMGGG HHDFESHPGN  240
NNLYPFQGSS GTSGMVEVGD NHDDHQMSHD HSNMMFRSRV SQLIPQVKVE DHRGNQLLVG  300
GGGLNLLRPN LGLSSSENNN YWGPSNGNTA SSTQWTDLST LNTTNINTST THPLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5EJ95	1e-104	A0A2P5EJ95_TREOI; Zinc finger, Dof-type
STRING	XP_010106451.1	3e-74	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	4e-44	Dof family protein