PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03816.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 324aa    MW: 37380.9 Da    PI: 4.4134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03816.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.8e-1691173286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt++e+l+L++a  e+  + ++++l+   W+ev++k++e  ++ r+ +qC+++++ l+k+ykk+k+++  +   ++s+++yf++++
  PK03816.1  91 WTERETLVLLDAWGERFLQRGKKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKANSTMG---VTSKWSYFRKMD 173
                *************************************762678***********************99986...8899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-2290173No hitNo description
PROSITE profilePS500906.66791148IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.4E-591157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
VGDDEDDDEE EEEDEMDDEN DEAEDEDHDK RKDYDRQNDD EDLQRHPKKR KLMSLVSSFE  60
FAPHVPSAPR SVATTSAPRV SFGGRSSLTD WTERETLVLL DAWGERFLQR GKKSLRSEEW  120
QEVAEKVSEV SKIDRTDTQC RNRLDTLKKK YKKEKANSTM GVTSKWSYFR KMDLLLSTAN  180
QQPGLSCGMD SGEYVFMNPR VYLNCANGLD EMRDSPGNSE LEGSDDSDGL PPKKRKSGRD  240
NDHDEGSSFR LLANTIHKFG EIYEKIEDSK RQQMAELEKM RMDFQRDLEL QRRQIIERAQ  300
AEIEKIQQSD DDEEIDVSAE NASG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950KRKDYDRQNDDEDLQRHPKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098044.11e-150trihelix transcription factor ASIL1
RefseqXP_024022519.11e-150trihelix transcription factor ASIL1
TrEMBLA0A2P5AF441e-170A0A2P5AF44_TREOI; Myb-like domain containing protein
STRINGXP_010098044.11e-149(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-70Trihelix family protein